prot_H-elongata_contig177350.4660.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig177350.4660.1
Unique Nameprot_H-elongata_contig177350.4660.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
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BLAST of mRNA_H-elongata_contig177350.4660.1 vs. uniprot
Match: D8LKL0_ECTSI (Similar to CG4672-PA isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL0_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.010e-29
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 0 
Query:    1 VVYRASAVLVLYFVLMATAGGAINYIYAKLWPLKFLSIAVCFGGTLFMPDPALFGVYAEVARVLSFTWMLFQVFVEIN 78
            VVYRAS+VL LYFVLMATAGGA++YIYA LWPLKFL++A   GG LF+PDPALFGVYAEVARVLS  WMLFQ F+ ++
Sbjct:   91 VVYRASSVLFLYFVLMATAGGAVHYIYANLWPLKFLAVAGGVGGMLFLPDPALFGVYAEVARVLSLVWMLFQGFLVLD 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177350.4660.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKL0_ECTSI2.010e-2975.64Similar to CG4672-PA isoform 1 n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005016Serine incorporator/TMS membrane proteinPFAMPF03348Serinccoord: 2..75
e-value: 2.2E-5
score: 23.6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..77
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..54
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 78..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..59
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 36..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177350contigH-elongata_contig177350:222..1016 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177350.4660.1mRNA_H-elongata_contig177350.4660.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig177350 222..1016 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig177350.4660.1 ID=prot_H-elongata_contig177350.4660.1|Name=mRNA_H-elongata_contig177350.4660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
VVYRASAVLVLYFVLMATAGGAINYIYAKLWPLKFLSIAVCFGGTLFMPD
PALFGVYAEVARVLSFTWMLFQVFVEIN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005016TDE1/TMS