mRNA_H-elongata_contig177350.4660.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177350.4660.1
Unique NamemRNA_H-elongata_contig177350.4660.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177350.4660.1 vs. uniprot
Match: D8LKL0_ECTSI (Similar to CG4672-PA isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL0_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.010e-29
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 VVYRASAVLVLYFVLMATAGGAINYIYAKLWPLKFLSIAVCFGGTLFMPDPALFGVYAEVARVLSFTWMLFQVFVEIN 234
            VVYRAS+VL LYFVLMATAGGA++YIYA LWPLKFL++A   GG LF+PDPALFGVYAEVARVLS  WMLFQ F+ ++
Sbjct:   91 VVYRASSVLFLYFVLMATAGGAVHYIYANLWPLKFLAVAGGVGGMLFLPDPALFGVYAEVARVLSLVWMLFQGFLVLD 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177350.4660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKL0_ECTSI2.010e-2975.64Similar to CG4672-PA isoform 1 n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177350contigH-elongata_contig177350:222..1016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.7e-24
Seed eggNOG ortholog2880.D8LKL0
Preferred nameSERINC3
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002252,GO:0002376,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006575,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006658,GO:0006665,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006950,GO:0006952,GO:0006955,GO:0007272,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008324,GO:0008366,GO:0008509,GO:0008514,GO:0008610,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009597,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015194,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015825,GO:0015849,GO:0016020,GO:0016021,GO:0016053,GO:0019637,GO:0019752,GO:0019899,GO:0022857,GO:0022889,GO:0023051,GO:0023056,GO:0030148,GO:0030674,GO:0031090,GO:0031224,GO:0031984,GO:0032329,GO:0032501,GO:0032502,GO:0034220,GO:0042175,GO:0042552,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044085,GO:0044091,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046394,GO:0046467,GO:0046486,GO:0046942,GO:0046943,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051607,GO:0051704,GO:0051707,GO:0055085,GO:0060090,GO:0065007,GO:0065009,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0098542,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098827,GO:0098852,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902235,GO:1902237,GO:1902475,GO:1902531,GO:1902533,GO:1903825,GO:1904217,GO:1904219,GO:1904220,GO:1904222,GO:1905039,GO:1905897,GO:1905898,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.serine transport
EggNOG OGsKOG2592@1,KOG2592@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSerine incorporator/TMS membrane protein
Ec32 orthologEc-16_003360.1
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.0027962-CDS-H-elongata_contig177350:221..3071622930026.0027962-CDS-H-elongata_contig177350:221..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177350 222..307 +
1691679251.586873-CDS-H-elongata_contig177350:221..3071691679251.586873-CDS-H-elongata_contig177350:221..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177350 222..307 +
1622930026.0142705-CDS-H-elongata_contig177350:868..10161622930026.0142705-CDS-H-elongata_contig177350:868..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177350 869..1016 +
1691679251.6033695-CDS-H-elongata_contig177350:868..10161691679251.6033695-CDS-H-elongata_contig177350:868..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177350 869..1016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177350.4660.1prot_H-elongata_contig177350.4660.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177350 222..1016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177350.4660.1

>prot_H-elongata_contig177350.4660.1 ID=prot_H-elongata_contig177350.4660.1|Name=mRNA_H-elongata_contig177350.4660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
VVYRASAVLVLYFVLMATAGGAINYIYAKLWPLKFLSIAVCFGGTLFMPD
PALFGVYAEVARVLSFTWMLFQVFVEIN
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mRNA from alignment at H-elongata_contig177350:222..1016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177350.4660.1 ID=mRNA_H-elongata_contig177350.4660.1|Name=mRNA_H-elongata_contig177350.4660.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at H-elongata_contig177350:222..1016+ (Himanthalia elongata Himel1 dioecious)
GTGGTTTACCGTGCATCGGCCGTACTTGTCCTGTACTTCGTGCTGATGGC
CACCGCTGGCGGCGCGATTAACTATATCTACGCAAAGTGAGTGAGCCCGC
GAGGAGATATGGTCGAGGCAGACAGTGACACTGCTATTCGCGGCATGCGA
CGGTCGGGCGCGAAGGAGTCTTCGCAGTCAGGAAGATGTTATATTGATGC
CTAGTTGAGGATGGCGGGGGGGGGGGGCAAACGTGTGGGTATGTTGTGGG
GTGGTTCGGGGTTCGTCTGGAGGCGCTTTCGTTTTGATCTACCAGAAGCA
GCGGTGTGGTAGTCGTCTCTCCTGCCTCATTATCTCCTCTAAGCCCCCCC
CCCGCTTGGATTTACATCTCATCCCCACGACCTTTTGCGGCTTATCACTA
ATCTTATCACTATCACCAATGTACCAATACATGAATGGAACGGCGAGGAA
TGAAGCCAAAGTGAAATCGAACCCAAACGAGGCTTGGCAGAATATGAAAG
TGAAATGGAACTTCATGGAAGAGAACGAAACGAAAGGCTTTCTTAATCCA
TACATACATACATACATATATATATATATATACATATATGCCGACGCCGC
TCGCTCGACAGCTTAACTTTACCGGCGTGTCATTGTTTTTTTTTAAGGCT
CTGGCCGCTAAAGTTCCTGTCGATCGCGGTTTGCTTCGGGGGCACGCTGT
TTATGCCCGATCCCGCGCTCTTCGGCGTCTACGCGGAGGTGGCCCGAGTG
CTTTCTTTTACGTGGATGCTGTTCCAGGTATTTGTCGAAATTAAT
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Coding sequence (CDS) from alignment at H-elongata_contig177350:222..1016+

>mRNA_H-elongata_contig177350.4660.1 ID=mRNA_H-elongata_contig177350.4660.1|Name=mRNA_H-elongata_contig177350.4660.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig177350:222..1016+ (Himanthalia elongata Himel1 dioecious)
GTGGTTTACCGTGCATCGGCCGTACTTGTCCTGTACTTCGTGCTGATGGC
CACCGCTGGCGGCGCGATTAACTATATCTACGCAAAGTGGTTTACCGTGC
ATCGGCCGTACTTGTCCTGTACTTCGTGCTGATGGCCACCGCTGGCGGCG
CGATTAACTATATCTACGCAAAGCTCTGGCCGCTAAAGTTCCTGTCGATC
GCGGTTTGCTTCGGGGGCACGCTGTTTATGCCCGATCCCGCGCTCTTCGG
CGTCTACGCGGAGGTGGCCCGAGTGCTTTCTTTTACGTGGATGCTGTTCC
AGGTATTTGTCGAAATTAATGCTCTGGCCGCTAAAGTTCCTGTCGATCGC
GGTTTGCTTCGGGGGCACGCTGTTTATGCCCGATCCCGCGCTCTTCGGCG
TCTACGCGGAGGTGGCCCGAGTGCTTTCTTTTACGTGGATGCTGTTCCAG
GTATTTGTCGAAATTAAT
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