mRNA_H-elongata_contig177322.4659.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177322.4659.1
Unique NamemRNA_H-elongata_contig177322.4659.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: D7G9E2_ECTSI (Possible vitamin K epoxide reductase, plastid protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.980e-20
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    7 ALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAMSKIKYVE 135
            ALRIGKKLKSLDAKMYGAYWCTHCF+QKEM+GKQ MSK+KY+E
Sbjct:  227 ALRIGKKLKSLDAKMYGAYWCTHCFNQKEMLGKQVMSKVKYIE 269
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BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: A0A6H5K243_9PHAE (VKc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K243_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.290e-20
Identity = 38/43 (88.37%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    7 ALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAMSKIKYVE 135
            ALRIGKKLKSLDAKMYGAYWCTHCF+QKEM+GK+AMSK+KY+E
Sbjct:  316 ALRIGKKLKSLDAKMYGAYWCTHCFNQKEMLGKEAMSKVKYIE 358
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BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: A0A836CDR7_9STRA (VKc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.040e-12
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    7 ALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAMSKIKYVE 135
            ++R+ K+L+ LDA MYGAYWC+HC HQKE+ G +A ++IKYVE
Sbjct:  191 SVRLAKRLEKLDAAMYGAYWCSHCHHQKELFGAEAFARIKYVE 233
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BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: A0A7S3P7K1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7K1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.540e-12
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 KALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAMSKIKYVE 135
            +AL I  +L +L+AKMYGAYWC+HCF QKE +GK+AM +I Y+E
Sbjct:  316 RALEISNELATLNAKMYGAYWCSHCFDQKEQLGKEAMQRIPYIE 359
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BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: B7G622_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G622_PHATC)

HSP 1 Score: 67.8 bits (164), Expect = 4.530e-12
Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    4 KALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAMSKIKYVE 135
            +AL +  +L++LD KMYGAYWC+HC+ QKE++G QAM+KI Y+E
Sbjct:  301 RALALSSQLQALDTKMYGAYWCSHCYDQKELLGVQAMAKIPYIE 344
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BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: A0A5J4YSL9_PORPP (Thiol-disulfide oxidoreductase LTO1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSL9_PORPP)

HSP 1 Score: 67.4 bits (163), Expect = 6.870e-12
Identity = 26/43 (60.47%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    7 ALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAMSKIKYVE 135
            ALR+ K+L+S DAKM+GAYWC+HC+ QK+ +GK+A + IKY+E
Sbjct:  399 ALRLAKQLESQDAKMFGAYWCSHCYSQKQALGKEAFAYIKYIE 441
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BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: A0A7S3V726_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V726_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.530e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 KALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAM-SKIKYVE 135
            +AL+IG  LK+LDAKMYGAYWC+HCF QK+ +GK+A    ++YVE
Sbjct:  156 RALKIGADLKTLDAKMYGAYWCSHCFEQKQRLGKEAYYGNVQYVE 200
[Close]
BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: A0A6T6NYM0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6NYM0_9RHOD)

HSP 1 Score: 64.7 bits (156), Expect = 1.010e-11
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    7 ALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAMSKIKYVE 135
            AL I  +L+S   KMYGA+WC+HCF QK+M+GK+AM KI YVE
Sbjct:   58 ALGIADRLESKHTKMYGAFWCSHCFGQKQMLGKEAMQKIDYVE 100
[Close]
BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: A0A7S3Q0V2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0V2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.730e-11
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 KALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAM-SKIKYVE 135
            +AL+IG  LK+LDAKMYGAYWC+HCF QK+ +GK+A    ++YVE
Sbjct:  331 RALKIGADLKTLDAKMYGAYWCSHCFEQKQRLGKEAYYGNVQYVE 375
[Close]
BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Match: A0A6T8M9F0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8M9F0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.320e-11
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    7 ALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAMSKIKYVE 135
            A+ +   L+ LDAKMYGA+WC+HC  QKE +G +A +K+KYVE
Sbjct:   66 AVELATSLQKLDAKMYGAFWCSHCLEQKETLGMEAFAKVKYVE 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177322.4659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E2_ECTSI3.980e-2088.37Possible vitamin K epoxide reductase, plastid prot... [more]
A0A6H5K243_9PHAE6.290e-2088.37VKc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CDR7_9STRA2.040e-1260.47VKc domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3P7K1_9STRA3.540e-1261.36Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G622_PHATC4.530e-1259.09Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A5J4YSL9_PORPP6.870e-1260.47Thiol-disulfide oxidoreductase LTO1 n=1 Tax=Porphy... [more]
A0A7S3V726_9STRA8.530e-1262.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6T6NYM0_9RHOD1.010e-1162.79Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3Q0V2_9STRA1.730e-1162.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6T8M9F0_9STRA3.320e-1155.81Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177322contigH-elongata_contig177322:6..146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue3.8e-16
Seed eggNOG ortholog2880.D7G9E2
GOsGO:0003674,GO:0003824,GO:0003955,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010207,GO:0015979,GO:0016043,GO:0016491,GO:0016651,GO:0016655,GO:0019684,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065003,GO:0071840
EggNOG free text desc.Vitamin K epoxide reductase family
EggNOG OGs2QRER@2759,COG4243@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.9576292-CDS-H-elongata_contig177322:5..1461622930025.9576292-CDS-H-elongata_contig177322:5..146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177322 6..146 -
1691679251.5739207-CDS-H-elongata_contig177322:5..1461691679251.5739207-CDS-H-elongata_contig177322:5..146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177322 6..146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177322.4659.1prot_H-elongata_contig177322.4659.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177322 6..146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177322.4659.1

>prot_H-elongata_contig177322.4659.1 ID=prot_H-elongata_contig177322.4659.1|Name=mRNA_H-elongata_contig177322.4659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
KKALRIGKKLKSLDAKMYGAYWCTHCFHQKEMMGKQAMSKIKYVEW*
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mRNA from alignment at H-elongata_contig177322:6..146-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177322.4659.1 ID=mRNA_H-elongata_contig177322.4659.1|Name=mRNA_H-elongata_contig177322.4659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig177322:6..146- (Himanthalia elongata Himel1 dioecious)
AAAAAGGCTCTAAGGATTGGCAAGAAGCTGAAGTCTTTGGATGCAAAGAT
GTACGGAGCCTACTGGTGCACGCACTGCTTTCACCAAAAAGAAATGATGG
GCAAGCAGGCGATGTCAAAAATCAAATACGTGGAATGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig177322:6..146-

>mRNA_H-elongata_contig177322.4659.1 ID=mRNA_H-elongata_contig177322.4659.1|Name=mRNA_H-elongata_contig177322.4659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig177322:6..146- (Himanthalia elongata Himel1 dioecious)
AAAAAGGCTCTAAGGATTGGCAAGAAGCTGAAGTCTTTGGATGCAAAGAT
GTACGGAGCCTACTGGTGCACGCACTGCTTTCACCAAAAAGAAATGATGG
GCAAGCAGGCGATGTCAAAAATCAAATACGTGGAATGGTAAAAAAAGGCT
CTAAGGATTGGCAAGAAGCTGAAGTCTTTGGATGCAAAGATGTACGGAGC
CTACTGGTGCACGCACTGCTTTCACCAAAAAGAAATGATGGGCAAGCAGG
CGATGTCAAAAATCAAATACGTGGAATGGTAA
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