mRNA_H-elongata_contig177263.4654.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177263.4654.1
Unique NamemRNA_H-elongata_contig177263.4654.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: A0A8J2WTR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTR4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.470e-12
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   28 RDRLQVPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRLSVLAASENPVEIWPFLLSK 207
            +DR   PCYNP G+Y+VK+F  G WR+V+IDD +P++A   + +  S    E+WPF+L+K
Sbjct:  226 QDRSGRPCYNPGGKYVVKVFFCGSWRRVQIDDRVPINARGQATIVFSRERRELWPFILAK 285          
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: A0A397ER62_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ER62_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.890e-12
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   40 QVPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRLSVLAASENPVEIWPFLLSK 207
            ++P  NP G+YLVKLF  G+WRK+E+DD +P+D     V+ +S  P EIWP LL+K
Sbjct:  149 RIPTVNPGGKYLVKLFVMGKWRKIEVDDRMPLDDQGKVVVLSSSQPSEIWPTLLAK 204          
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: W4GWQ1_9STRA (Calpain catalytic domain-containing protein n=14 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GWQ1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.750e-12
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   40 QVPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRLSVLAASENPVEIWPFLLSK 207
            ++P  NP G+YLVKLF  G+WRKVE+DD +P+D     V+ +S  P EIWP LL+K
Sbjct:  345 RIPTVNPGGKYLVKLFVMGKWRKVEVDDRMPLDDQGKVVVLSSSQPSEIWPTLLAK 400          
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: D8LMH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH7_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.420e-12
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 1
Query:   40 QVPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDAT 144
            +VPCYNP GRYL+KLFAAGRWR+VE+DD IP+DAT
Sbjct:  341 EVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDAT 375          
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: A0A482RSF0_9ARCH (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSF0_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 3.640e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   40 QVPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRLSVLAASENPVEIWPFLLSK 207
            Q P YNP+G+Y VKLF AG+WRKV +DD +PV++     +A S + +E+WP LLSK
Sbjct:  203 QKPVYNPAGKYAVKLFLAGKWRKVYVDDSLPVNSKGQLAVAHSVDTLELWPILLSK 258          
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: A0A1V9ZIS5_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIS5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.130e-12
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   16 PQPLRDRLQVPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRLSVLAASENPVEIWPFLLSK 207
            PQ +    ++P  NP G+YLVKLF  G+WR+VE+DD +P+D     V+ +S  P EIWP LL+K
Sbjct:  330 PQTVVGGRRLPVCNPGGKYLVKLFVLGKWRRVEVDDRLPLDKASRVVILSSTLPSEIWPSLLAK 393          
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: T0QRC4_SAPDV (Calpain catalytic domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QRC4_SAPDV)

HSP 1 Score: 68.9 bits (167), Expect = 5.130e-12
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   16 PQPLRDRLQVPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRLSVLAASENPVEIWPFLLSK 207
            PQ +    +VP  NP G+YLVKL+  G+WR+VE+DD +P+D     ++ +S  P EIWP LL+K
Sbjct:  329 PQSIVGGKKVPVANPGGKYLVKLYVLGKWRRVEVDDRLPLDKNGKVIVLSSTLPTEIWPSLLAK 392          
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: F4P4B4_BATDJ (Calpain catalytic domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P4B4_BATDJ)

HSP 1 Score: 68.6 bits (166), Expect = 7.030e-12
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   43 VPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRLSVLAASENPVEIWPFLLSK 207
            +P YNPSG+Y+VKLF  G WRK+ +DD IP+DA+   ++ +S    EIWP L+ K
Sbjct:  347 IPMYNPSGKYIVKLFWLGAWRKITVDDRIPIDASGKPLMISSPATTEIWPLLICK 401          
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: A0A5D6XS70_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS70_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.590e-12
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   28 RDRLQVPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRLSVLAASENPVEIWPFLLSK 207
            +D L  P YN  G+Y VKLF  GRWR+V++DD +PVDA    V  AS    EIWP LL+K
Sbjct:  378 QDALGTPVYNAGGKYAVKLFVLGRWRRVDVDDRLPVDADDNVVCLASSMRSEIWPSLLAK 437          
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Match: A0A7S2C2Q4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2Q4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.370e-11
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   46 PCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRLSVLAASENPVEIWPFLLSK 207
            P YNPSG+Y+VKL+ AG WR + IDD +PVDA    V+A S    EIWP LL+K
Sbjct:   28 PSYNPSGKYVVKLWVAGAWRAITIDDRMPVDANGYLVIANSTTSREIWPSLLAK 81          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177263.4654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2WTR4_9STRA1.470e-1246.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A397ER62_9STRA1.890e-1251.79Calpain catalytic domain-containing protein n=1 Ta... [more]
W4GWQ1_9STRA2.750e-1253.57Calpain catalytic domain-containing protein n=14 T... [more]
D8LMH7_ECTSI3.420e-1280.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482RSF0_9ARCH3.640e-1253.57Calpain catalytic domain-containing protein (Fragm... [more]
A0A1V9ZIS5_9STRA5.130e-1248.44Calpain catalytic domain-containing protein n=1 Ta... [more]
T0QRC4_SAPDV5.130e-1246.88Calpain catalytic domain-containing protein n=1 Ta... [more]
F4P4B4_BATDJ7.030e-1250.91Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A5D6XS70_9STRA9.590e-1253.33Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S2C2Q4_9STRA2.370e-1157.41Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177263contigH-elongata_contig177263:208..889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue4.6e-10
Seed eggNOG ortholog112098.XP_008609458.1
Preferred nameADGB
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.4700923-CDS-H-elongata_contig177263:207..3601622930025.4700923-CDS-H-elongata_contig177263:207..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177263 208..360 +
1691679251.3695405-CDS-H-elongata_contig177263:207..3601691679251.3695405-CDS-H-elongata_contig177263:207..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177263 208..360 +
1622930025.4914794-CDS-H-elongata_contig177263:835..8891622930025.4914794-CDS-H-elongata_contig177263:835..889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177263 836..889 +
1691679251.380533-CDS-H-elongata_contig177263:835..8891691679251.380533-CDS-H-elongata_contig177263:835..889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177263 836..889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177263.4654.1prot_H-elongata_contig177263.4654.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177263 208..889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177263.4654.1

>prot_H-elongata_contig177263.4654.1 ID=prot_H-elongata_contig177263.4654.1|Name=mRNA_H-elongata_contig177263.4654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MLPSTPQPLRDRLQVPCYNPSGRYLVKLFAAGRWRKVEIDDDIPVDATRL
SVLAASENPVEIWPFLLSK
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mRNA from alignment at H-elongata_contig177263:208..889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177263.4654.1 ID=mRNA_H-elongata_contig177263.4654.1|Name=mRNA_H-elongata_contig177263.4654.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=682bp|location=Sequence derived from alignment at H-elongata_contig177263:208..889+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCCCTCCACTCCCCAACCACTGCGCGACCGTTTGCAGGTTCCGTG TTACAATCCCAGCGGCCGTTACCTCGTGAAGCTATTTGCTGCCGGGCGAT GGAGGAAGGTTGAAATAGATGATGATATACCGGTGGATGCAACGAGGTTA TCGGTAAGTCTGCTTGGTGGATGTTGAGCCATCACATATTAAACATTTTT CGGAGTTGGATCTTTTGCCGCCGTACATCGTGGATTTAAAGGCACAACGT CCGAGAGAAATTTACTGGGATCAATTCCGGAGGAGACCCCCATAACTCCA GAGTGAGCGCTGTATTTTTTCTTCGCCGATGATTTCTGCTCGGTGTTATT AGTATACCTATGATATTTTTCTTGAACGCTTCGCAAACCACTCCTTTCTT TTCGTAACCGACTCCATGGTCCCCTCACCATTCCACTAATAAGACGGCTT GATGAATGAAATCAATTTTTCTTTACACCGGCGCTCAAAATCGTGCGGCG AATGTTAGGGCCGCACGACGTTTCCATGAACAACGTCGTCAGTGTCACCG TGAAGATAGCGGTCGGGGTTTGTTGAGCGATCAATGCGCCTTACACTCTT CGCTTTTTCGCCTGGTACTCCCGAACAGGTTCTTGCTGCAAGTGAGAATC CTGTGGAGATTTGGCCATTCCTACTTTCAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig177263:208..889+

>mRNA_H-elongata_contig177263.4654.1 ID=mRNA_H-elongata_contig177263.4654.1|Name=mRNA_H-elongata_contig177263.4654.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig177263:208..889+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCCCTCCACTCCCCAACCACTGCGCGACCGTTTGCAGGTTCCGTG
TTACAATCCCAGCGGCCGTTACCTCGTGAAGCTATTTGCTGCCGGGCGAT
GGAGGAAGGTTGAAATAGATGATGATATACCGGTGGATGCAACGAGGTTA
TCGATGCTTCCCTCCACTCCCCAACCACTGCGCGACCGTTTGCAGGTTCC
GTGTTACAATCCCAGCGGCCGTTACCTCGTGAAGCTATTTGCTGCCGGGC
GATGGAGGAAGGTTGAAATAGATGATGATATACCGGTGGATGCAACGAGG
TTATCGGTTCTTGCTGCAAGTGAGAATCCTGTGGAGATTTGGCCATTCCT
ACTTTCAAAAGTTCTTGCTGCAAGTGAGAATCCTGTGGAGATTTGGCCAT
TCCTACTTTCAAAA
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