prot_H-elongata_contig177242.4653.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig177242.4653.1
Unique Nameprot_H-elongata_contig177242.4653.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length38
Homology
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: D7G1U6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U6_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.010e-16
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GKTAEEIR+TFNIVNDFTPEEEAQVREENKWCEDA
Sbjct:  148 KGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 183          
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: F0XYF9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYF9_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 3.890e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  122 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 157          
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A482SUX2_9ARCH (Skp1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUX2_9ARCH)

HSP 1 Score: 70.5 bits (171), Expect = 5.230e-15
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GK+ EEIR+ FNIVNDFTPEEEAQVREENKWCEDA
Sbjct:   48 KGKSPEEIRKQFNIVNDFTPEEEAQVREENKWCEDA 83          
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A836CN28_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN28_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.500e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  147 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 182          
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A7S2SQM9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQM9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.500e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  147 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 182          
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A7S2S0P7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0P7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.510e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GKT EEIRRTFNIVNDF+PEEEAQVREENKWCE+A
Sbjct:  130 KGKTPEEIRRTFNIVNDFSPEEEAQVREENKWCEEA 165          
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A835Z9K0_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.160e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  152 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 187          
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A0G4EPG4_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPG4_VITBC)

HSP 1 Score: 72.0 bits (175), Expect = 8.820e-15
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GKT EEIR+ FNIVNDFTPEEEAQVREENKWCEDA
Sbjct:  128 KGKTPEEIRKQFNIVNDFTPEEEAQVREENKWCEDA 163          
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A7S2DNG6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNG6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-14
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  177 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 212          
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A6U0KEA3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0KEA3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.220e-14
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0
Query:    2 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 37
            +GKT EEIRRTFNI NDF+PEEEAQVREENKWCE+A
Sbjct:   96 KGKTPEEIRRTFNIANDFSPEEEAQVREENKWCEEA 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U6_ECTSI3.010e-1694.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0XYF9_AURAN3.890e-1588.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482SUX2_9ARCH5.230e-1586.11Skp1 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A836CN28_9STRA6.500e-1588.89Skp1 family, dimerization domain-containing protei... [more]
A0A7S2SQM9_9STRA6.500e-1588.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2S0P7_9STRA6.510e-1588.89Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A835Z9K0_9STRA7.160e-1588.89Skp1 family, dimerization domain-containing protei... [more]
A0A0G4EPG4_VITBC8.820e-1588.89Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S2DNG6_9STRA1.110e-1488.89Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6U0KEA3_9STRA1.220e-1486.11Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 1..34
e-value: 6.8E-18
score: 64.5
NoneNo IPR availableGENE3D3.30.710.10coord: 1..36
e-value: 9.5E-16
score: 59.7
NoneNo IPR availablePANTHERPTHR11165SKP1coord: 2..36
NoneNo IPR availablePANTHERPTHR11165:SF120S-PHASE KINASE-ASSOCIATED PROTEIN 1coord: 2..36
IPR036296SKP1-like, dimerisation domain superfamilySUPERFAMILY81382Skp1 dimerisation domain-likecoord: 2..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177242contigH-elongata_contig177242:972..1085 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177242.4653.1mRNA_H-elongata_contig177242.4653.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig177242 972..1085 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig177242.4653.1 ID=prot_H-elongata_contig177242.4653.1|Name=mRNA_H-elongata_contig177242.4653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
FQGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016072Skp1_comp_dimer
IPR036296SKP1-like_dim_sf