mRNA_H-elongata_contig10562.465.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10562.465.1 vs. uniprot
Match: A0A6H5KNZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ3_9PHAE) HSP 1 Score: 413 bits (1062), Expect = 2.340e-119 Identity = 424/1140 (37.19%), Postives = 560/1140 (49.12%), Query Frame = 3
Query: 6 VPKGVSSVGQLSSDAIIEAVGSLVPGIDGSSPLPEARSTRGRHPADRHRVCLAVASRIREVGYSDPLSAHQLLYPAEGSTRQLLLALLSMLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVAEEREGSDLQSSELS-EKERDTV-RVGD-IGAVSSSQDLEALQ-SGGPGSIQKEGTEARTIRTDNDDPKFFEKQDASSEQEPGESQDTEGVEEDGIHPGKGCIADEGVEEVRCNEEGEAEKAAGEGHVIEVLPQYDQRGGEGRKEGKDASSEAQDEDEAAEFRVRAKVVDPLSEKPGSSDTSIGAASTAQLHELENGRMVVPD---GDVSVEELGRVGITDENGDVDYADRASNNGRLEQXXXXXXXXXXXXVFGGGPVRLKAVVDE-ETETIKRSETAILAATAEGHDAME----GVEDFNSGLEKKQAVDVA--------GYPEEQAVGSTP-----EVKGAGAVGSERMIDLQESPVDEGGPKGEDEGDGKGDSGVP-PPIFREQ-----HSGKISTVLDSAE---AAPDVETAKLA-------TGEIPEESCDPAIFKNEGEAAAE---VQRKKESLAPKDCDLNGEETTSPVEEEKEEREVPAELEVEATTPFE--DGVGLGEGVVDGIKETAGDDNNEDDVAFLQFLVDAQEAELNRLLEEEEIASKTVNQLQEEVRSLASLAEEREDHCRFAAKALELLPNATEETVRLQREITAVESQMRAAQKSFAKTRKPLEEVVRVQREELARRKARCRDLLSEIRNKYDESEEMTRQESLLRAAARDMERWERQKWGDITTGSEEGGEDLWGGWGEDVV----EEKEGAEETR-RKQAGALMRAEIDKYIASLCDEALAQKQEISISLSEVLDSRREANSAWDLLGRSEALAEEKLFSASKDAIYN----HKDRARDLIEAYNNRCLHAMDGVFSSLMETVSGLTKREEECQLVEDETARIVSQHGGSSLVQILLRDLKRVREDAFALEQRLDEVLEEQRLRQVARQEAE-RLGLEEE--RRAAEEQGHVASEVIVERVEEIEEGLDETTSPEQRDVLDAPALIEKEHEEEDDNGRQNSDGEERLDESGADGAENRAENE--EVRG----------DDEIDFIGDDEEDNVWQ 3215
VP GVSSVGQLSSDA+I+AVG ++ G+DGS P PEA ST G HPA+R C VASR+R+ GYS+PLSAHQLLYP TR++LL LL+MLP E ++ DL SS++ ER + R D + S Q+ EA + GG + + A + + DA + E S+ G E+ G D E G+ + + + + RGG S A D + + L GS ++ S E G V + G S + D+NG D G PV V DE ET E + A DA GVE G+ + +A + G P E ST GAG V D +PV P E G+G+ +S V PP+ E H G +S + A P+ TA+ A +G E+ P + + E E AE E A NG + V+ +E + A EA P E D G G EDDV FLQF V+A+E EL RLL E E K ++L++EV+ L SLAEERE HCR+AAKALELLPNA ET R+Q E A E++M AA K+F K RKPLE VVRVQRE+LARRKARCR L++E+R Y E +EM++QES L AAARDME WE + G++ G E+GG+ EE +EE R R++AGA +R+ IDK I SLC++A AQKQEI+ISL+EVLDSRREAN AW+LLGR+EAL EE++FSA+K A +KDRA+DL EAY + LHA+ VFS ++E +S + +REEEC+ VE ET +++S+ GG+ +Q+L RDL+RV+ DAFALEQRLD+ LEE+RL Q A QE + G ++ RR +++ A+E +VE+ E+ G D T Q D DA +E +++ E DE A G E R E E E RG D E DF+G+DE DNVWQ
Sbjct: 177 VPHGVSSVGQLSSDAVIQAVGFMIAGMDGSRPPPEALSTTGCHPAERFHACRLVASRVRDAGYSEPLSAHQLLYPGGEDTRRMLLDLLAMLPPDGAKSPPPELASGTGPPLLPEGGK---------ERQQADDLLSSDVGGTAERGSADRYNDNMSPRSEGQEEEAARVCGGTDASSPQSAVAENVP----------ETDAQEKGEHAVSESGSGEEDSPPSDAGGDAGDGPTALAGAGETGDMDGSEDPALPASPSGRQNPRGG----------SAASD------------IAEGLGSPSGSGKEALAKVSGRSTPSAEKGGNAVGERGGGQASRDXX----XXDDNGGDD----------------------------GAPV--SHVSDELGNETESEEEDNVFTAEPSCEDATASVGTGVEAEEEGMTRDEASEGGSCKGDEGEGVPAEMTAPSTGGDDDVSAPGAGFVNGNGSGDT--APVGIVDPSDEP-GEGEPESLVENPPLPSEALDEPLHQGAGEPARESGDGDCADPNGATAQGAAEPVAGPSGASGEDERSPGVPQAESEGDAEGGVCAVGDEEAAAVGLTANGGKPGGAVDAAEERGDSSASPSGEALPPEEGADVEGGKGGPXXXXXXXXXXXGTEDDVVFLQFEVEAKELELKRLLAEREGQDKAADELEKEVQRLGSLAEEREKHCRYAAKALELLPNAAAETSRMQNECVAAEARMHAAAKAFEKGRKPLEAVVRVQREKLARRKARCRALVTEMRGMYAECQEMSQQESALMAAARDMEVWESKARGEVVIGPEKGGDXXXXXXXXXXXXXXGEEXHDSEEARKRRKAGAALRSHIDKRITSLCEDAAAQKQEIAISLTEVLDSRREANGAWELLGRAEALPEERIFSAAKQAKSGSGGTNKDRAKDLTEAYKH--LHALGEVFSKIVEAMSEVGRREEECRSVERETEKMLSRQGGNVRLQLLTRDLERVKGDAFALEQRLDQALEEERLNQKASQETQDSFGAAQDVTRRDSDDN---ANEAVVEQDEQASCGND-TCGEVQDDDDDAEQQDLPLRAQEHGKAAESTLDVEVQDERSAAGGEERGEGEAPEQRGSGAGGDVVESDQEADFVGEDEVDNVWQ 1232
BLAST of mRNA_H-elongata_contig10562.465.1 vs. uniprot
Match: D7FJ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ88_ECTSI) HSP 1 Score: 349 bits (895), Expect = 3.330e-98 Identity = 260/538 (48.33%), Postives = 338/538 (62.83%), Query Frame = 3
Query: 1716 LEVEATTPFEDG-VGLGEGVVDGIKETAGDDNNEDDVAFLQFLVDAQEAELNRLLEEEEIASKTVNQLQEEVRSLASLAEEREDHCRFAAKALELLPNATEETVRLQREITAVESQMRAAQKSFAKTRKPLEEVVRVQREELARRKARCRDLLSEIRNKYDESEEMTRQESLLRAAARDMERWERQKWGDITTGSEEG-----------GEDLWGGWGEDVVEEKEGAEETR-RKQAGALMRAEIDKYIASLCDEALAQKQEISISLSEVLDSRREANSAWDLLGRSEALAEEKLFSASKDAIYN----HKDRARDLIEAYNNRCLHAMDGVFSSLMETVSGLTKREEECQLVEDETARIVSQHGGSSLVQILLRDLKRVREDAFALEQRLDEVLEEQRLRQVARQEAERLGLEEERR--AAEEQGHVASEVIVERVEEIEEGLDE-------TTSPEQRDVLDAPALIEKEHEEEDDNGRQNSDGEERLDESGADGAENRAENEE------------VRGDDEIDFIGDDEEDNVWQ 3215
LE EA P E G V G+G G EDDV FLQF V+A+E EL RLL E E + ++L++EVR L SLAEERE HCR+AAKALELLPNA ET R+Q+E A E++M AA K+F K KPLE VVRVQRE+LARRKARCR L++E+R Y E ++M++QES L+AAARD E WE + G++ G E+G G+ WG EE++ +EE R R+ AGA++R+ IDK I SLC++A AQKQEI+ISL+EVLDSRREAN AW+LLGR+EAL EE++FSA+K A +KDRA+D EAY + LHA+ VFS ++E +S + +REEEC+LVE ET +++S+ GGS +Q+L RDL+RV+ DAFALEQRLD+ LEE+RL Q A QE E E R A + A+E + E+ E+ G D EQ+D+ P+ +EH E D E + S + G E R E + V D E DF+G+DEEDNVWQ
Sbjct: 492 LEGEALPPEEGGDVEGGKGAXXXXXXXXG---TEDDVVFLQFEVEAKELELKRLLSEGEGQDEEADELEKEVRRLGSLAEEREKHCRYAAKALELLPNAAAETSRMQKECVAAEARMHAAAKAFEKGWKPLEAVVRVQREKLARRKARCRALVTEMRGIYAECQDMSQQESALKAAARDTEVWESKARGEVVIGPEKGIGGDGXXXXXXGDAEWG-------EEEDDSEEARKRRNAGAVLRSHIDKRITSLCEDAAAQKQEIAISLTEVLDSRREANGAWELLGRAEALPEERIFSAAKQAKSGGGGANKDRAKDFTEAYKH--LHALGEVFSKVVEAISEVGRREEECRLVERETEKMLSRQGGSVRLQLLTRDLERVKGDAFALEQRLDQALEEERLNQKASQEQETQESFGEARDVARRDSDDNANEAVEEQDEQASYGDDTGGEVXXXXXXAEQQDL---PSRA-QEHGEA---AESTPDVELEDERSVSGGGEERGEGDAPXXXXXXXGGDVVESDQEADFVGEDEEDNVWQ 1010
BLAST of mRNA_H-elongata_contig10562.465.1 vs. uniprot
Match: L8H7P0_ACACA (Coiledcoil domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H7P0_ACACA) HSP 1 Score: 57.0 bits (136), Expect = 3.890e-6 Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 3
Query: 18 VSSVGQLSSDAIIEAVGSLVPGIDGSSPLPEARSTRGRHPADRHRVCLAVASRIREVGYSDPLSAHQLLYPAEGSTRQLL 257
V S+ QL +D + AV +LV ID S P P T R + + +C VA I+ +GY L H+L+YP E +TRQ+L
Sbjct: 23 VKSIKQLKTDDVANAVLALVKAIDPSQPFPR---TLPRQMSQKVNICSEVAQYIKGLGYKGDLGYHELVYPNEATTRQIL 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10562.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10562.465.1 >prot_H-elongata_contig10562.465.1 ID=prot_H-elongata_contig10562.465.1|Name=mRNA_H-elongata_contig10562.465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=982bp MLPPDGAPPPLPPLPPPALFASDQIPPPASAPPALVAEEREGSDLQSSELback to top mRNA from alignment at H-elongata_contig10562:760..8585+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10562.465.1 ID=mRNA_H-elongata_contig10562.465.1|Name=mRNA_H-elongata_contig10562.465.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7826bp|location=Sequence derived from alignment at H-elongata_contig10562:760..8585+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10562:760..8585+ >mRNA_H-elongata_contig10562.465.1 ID=mRNA_H-elongata_contig10562.465.1|Name=mRNA_H-elongata_contig10562.465.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5892bp|location=Sequence derived from alignment at H-elongata_contig10562:760..8585+ (Himanthalia elongata Himel1 dioecious)back to top |