prot_H-elongata_contig105608.464.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig105608.464.1
Unique Nameprot_H-elongata_contig105608.464.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length253
Homology
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BLAST of mRNA_H-elongata_contig105608.464.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.810e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0 
Query:    1 MVDVVSKRCAGYGCLKQPKYGSAGSKKANYCAVHALEGM 39
            MVDVVSKRC   GC K+P YG+ GSKKA  CA HAL+GM
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGM 39
[Close]
BLAST of mRNA_H-elongata_contig105608.464.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.190e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0 
Query:    1 MVDVVSKRCAGYGCLKQPKYGSAGSKKANYCAVHALEGM 39
            MVDVV++RC   GC K+P +G  GSKK  +CA HA +GM
Sbjct:    1 MVDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105608.464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI3.810e-869.23EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LMB1_ECTSI2.190e-556.41EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105608contigH-elongata_contig105608:51..809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105608.464.1mRNA_H-elongata_contig105608.464.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig105608 19..809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig105608.464.1 ID=prot_H-elongata_contig105608.464.1|Name=mRNA_H-elongata_contig105608.464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
MVDVVSKRCAGYGCLKQPKYGSAGSKKANYCAVHALEGMVDVVNKRCFGD
GCLKQPTYGVASSKKVEYCSVHALDGMINVARKKCAGDGCLTRARYGVAG
SNKAKYCAVHASKGMINVVDKMCSSDGCGKKPSYGVAGSKKANFCAVHAL
EGMVNVSSKMRSGNGYLKQTFHGVSGNNKAEYCTVHAFEGMDKTHNGCSI
VRCVKRPSYSVAGRKNPKYFALHPLEGITGIAIQKFDGDISAVKNQAKSR
KRT
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