mRNA_H-elongata_contig17698.4641.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17698.4641.1
Unique NamemRNA_H-elongata_contig17698.4641.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 4.160e-25
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATDPASSDKRMGMVIIRGNSVVQFEILDPLRF 144
            GVLRGYDPFMNLVLD+ TDPASSDK+MGMVIIRGNSVVQFEILDPLRF
Sbjct:   28 GVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 75
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.480e-13
Identity = 30/49 (61.22%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATD-PASSDKRM-GMVIIRGNSVVQFEILDPLR 141
            GVLRGYD FMN+VLD+A + P+ +++R+ GMV+IRGNSV++FE+LDP++
Sbjct:   29 GVLRGYDQFMNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPVQ 77
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A0A6P8J6H9_ACTTE (Small nuclear ribonucleoprotein G n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8J6H9_ACTTE)

HSP 1 Score: 62.8 bits (151), Expect = 7.860e-12
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATDPASSDKR--MGMVIIRGNSVVQFEILDPL 138
            GVLRGYDPFMNLVLD+A + AS+ ++  +GMV+IRGNS+V  E LD +
Sbjct:   29 GVLRGYDPFMNLVLDEAVEDASATEKHSIGMVVIRGNSIVTMESLDRI 76
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A0A507DED3_9FUNG (Small nuclear ribonucleoprotein G n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DED3_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 8.050e-12
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATDPASSDK--RMGMVIIRGNSVVQFEILDPLR 141
            GVLRGYDPF+NLV+DDA +    ++   +GM++IRGNSVV  E ++P+R
Sbjct:   29 GVLRGYDPFLNLVVDDAIEEKKDNRIEELGMIVIRGNSVVSMEAIEPMR 77
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A7RII4_NEMVE (Small nuclear ribonucleoprotein G n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RII4_NEMVE)

HSP 1 Score: 62.8 bits (151), Expect = 8.050e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATDPASSDKR--MGMVIIRGNSVVQFEILD 132
            GVLRGYDPFMNLVLDDA +  S +++  +GMV+IRGNS+V  E LD
Sbjct:   29 GVLRGYDPFMNLVLDDAVENVSGNEKHAIGMVVIRGNSIVTMEALD 74
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A0A4P9Z4X7_9FUNG (Small nuclear ribonucleoprotein G n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z4X7_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 1.580e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATDPASSDKR--MGMVIIRGNSVVQFEILDPL 138
            GVLRGYDPFMN+VLD+A +  SS +R  +GM++IRGNS+V  E L+ +
Sbjct:   29 GVLRGYDPFMNIVLDEAVEEVSSSERNNIGMIVIRGNSIVSMEALERI 76
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.190e-11
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATDPASSDKR-MGMVIIRGNSVVQFEILDPL 138
            GVLRG+D FMN+VLD+  D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:   29 GVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 75
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A0A4P9ZXB0_9FUNG (Small nuclear ribonucleoprotein G n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZXB0_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 2.670e-11
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATDPASSDKR-MGMVIIRGNSVVQFEILDPL 138
            G+LRGYDPFMN+VLDDAT+  SSD++ +GM++IRGNS+   E  + +
Sbjct:   37 GILRGYDPFMNIVLDDATEEISSDRKDIGMIVIRGNSIEVLEAQEKI 83
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: W7TL56_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL56_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.020e-11
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATDPASSDKR-MGMVIIRGNSVVQFEILDPL 138
            GVLRG+D FMN+VLD+  D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:   42 GVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 88
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BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: U9SHN2_RHIID (Small nuclear ribonucleoprotein G n=6 Tax=Glomeraceae TaxID=36751 RepID=U9SHN2_RHIID)

HSP 1 Score: 61.2 bits (147), Expect = 3.190e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 GVLRGYDPFMNLVLDDATDPASSDKR--MGMVIIRGNSVVQFEILDPL 138
            G+LRGYDPFMNLVLDD  +  SS ++  +GMV+IRGNSVV  E L+ +
Sbjct:   29 GILRGYDPFMNLVLDDTVEEVSSSEKHNVGMVVIRGNSVVIMEALEKI 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR0_ECTSI4.160e-2593.75Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
A0A835YWI2_9STRA2.480e-1361.22Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A6P8J6H9_ACTTE7.860e-1262.50Small nuclear ribonucleoprotein G n=2 Tax=Actiniar... [more]
A0A507DED3_9FUNG8.050e-1255.10Small nuclear ribonucleoprotein G n=1 Tax=Synchytr... [more]
A7RII4_NEMVE8.050e-1265.22Small nuclear ribonucleoprotein G n=1 Tax=Nematost... [more]
A0A4P9Z4X7_9FUNG1.580e-1158.33Small nuclear ribonucleoprotein G n=1 Tax=Syncepha... [more]
A0A4D9CNZ1_9STRA2.190e-1161.70Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
A0A4P9ZXB0_9FUNG2.670e-1157.45Small nuclear ribonucleoprotein G n=1 Tax=Dimargar... [more]
W7TL56_9STRA3.020e-1161.70Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
U9SHN2_RHIID3.190e-1160.42Small nuclear ribonucleoprotein G n=6 Tax=Glomerac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17698contigH-elongata_contig17698:910..1056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.9e-12
Seed eggNOG ortholog2880.D8LRR0
Preferred nameSNRPG
KEGG koko:K11099
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034719,GO:0035770,GO:0036464,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045495,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsKOG1780@1,KOG1780@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionsmall nuclear ribonucleoprotein polypeptide G
Ec32 orthologEc-08_002090.1
Exons1
Model size147
Cds size120
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.6946898-UTR-H-elongata_contig17698:909..9361622930023.6946898-UTR-H-elongata_contig17698:909..936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17698 910..936 +
1691679250.4833634-UTR-H-elongata_contig17698:909..9361691679250.4833634-UTR-H-elongata_contig17698:909..936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17698 910..936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.717462-CDS-H-elongata_contig17698:936..10561622930023.717462-CDS-H-elongata_contig17698:936..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17698 937..1056 +
1691679250.4994848-CDS-H-elongata_contig17698:936..10561691679250.4994848-CDS-H-elongata_contig17698:936..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17698 937..1056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17698.4641.1prot_H-elongata_contig17698.4641.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17698 937..1056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17698.4641.1

>prot_H-elongata_contig17698.4641.1 ID=prot_H-elongata_contig17698.4641.1|Name=mRNA_H-elongata_contig17698.4641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MNLVLDDATDPASSDKRMGMVIIRGNSVVQFEILDPLRF*
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mRNA from alignment at H-elongata_contig17698:910..1056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17698.4641.1 ID=mRNA_H-elongata_contig17698.4641.1|Name=mRNA_H-elongata_contig17698.4641.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig17698:910..1056+ (Himanthalia elongata Himel1 dioecious)
GGTGTCTTGCGGGGATACGACCCTTTCATGAACTTGGTGCTGGACGATGC
TACTGATCCAGCATCCTCCGATAAAAGAATGGGAATGGTAATCATCAGAG
GAAACAGCGTCGTGCAGTTCGAGATCCTCGACCCACTCCGTTTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig17698:910..1056+

>mRNA_H-elongata_contig17698.4641.1 ID=mRNA_H-elongata_contig17698.4641.1|Name=mRNA_H-elongata_contig17698.4641.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig17698:910..1056+ (Himanthalia elongata Himel1 dioecious)
ATGAACTTGGTGCTGGACGATGCTACTGATCCAGCATCCTCCGATAAAAG
AATGGGAATGGTAATCATCAGAGGAAACAGCGTCGTGCAGTTCGAGATCC
TCGACCCACTCCGTTTCTAAATGAACTTGGTGCTGGACGATGCTACTGAT
CCAGCATCCTCCGATAAAAGAATGGGAATGGTAATCATCAGAGGAAACAG
CGTCGTGCAGTTCGAGATCCTCGACCCACTCCGTTTCTAA
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