mRNA_H-elongata_contig105608.464.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105608.464.1
Unique NamemRNA_H-elongata_contig105608.464.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105608.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105608contigH-elongata_contig105608:19..809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size792
Cds size759
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.55302-UTR-H-elongata_contig105608:18..501622929588.55302-UTR-H-elongata_contig105608:18..50Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105608 19..50 +
1691679081.6719735-UTR-H-elongata_contig105608:18..501691679081.6719735-UTR-H-elongata_contig105608:18..50Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105608 19..50 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.5690067-CDS-H-elongata_contig105608:50..8091622929588.5690067-CDS-H-elongata_contig105608:50..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105608 51..809 +
1691679081.6806452-CDS-H-elongata_contig105608:50..8091691679081.6806452-CDS-H-elongata_contig105608:50..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105608 51..809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105608.464.1prot_H-elongata_contig105608.464.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105608 51..809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105608.464.1

>prot_H-elongata_contig105608.464.1 ID=prot_H-elongata_contig105608.464.1|Name=mRNA_H-elongata_contig105608.464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
MVDVVSKRCAGYGCLKQPKYGSAGSKKANYCAVHALEGMVDVVNKRCFGD
GCLKQPTYGVASSKKVEYCSVHALDGMINVARKKCAGDGCLTRARYGVAG
SNKAKYCAVHASKGMINVVDKMCSSDGCGKKPSYGVAGSKKANFCAVHAL
EGMVNVSSKMRSGNGYLKQTFHGVSGNNKAEYCTVHAFEGMDKTHNGCSI
VRCVKRPSYSVAGRKNPKYFALHPLEGITGIAIQKFDGDISAVKNQAKSR
KRT
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mRNA from alignment at H-elongata_contig105608:19..809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105608.464.1 ID=mRNA_H-elongata_contig105608.464.1|Name=mRNA_H-elongata_contig105608.464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=791bp|location=Sequence derived from alignment at H-elongata_contig105608:19..809+ (Himanthalia elongata Himel1 dioecious)
CGGAATACTGTGCAGTGCATGCTTTGGAAGGGATGGTCGACGTCGTGAGC
AAGAGGTGTGCTGGTTATGGGTGTTTAAAGCAACCCAAGTATGGGTCGGC
CGGCAGCAAGAAAGCGAATTACTGCGCAGTGCACGCTTTGGAAGGGATGG
TCGACGTTGTGAACAAGAGGTGTTTTGGTGATGGATGTTTAAAGCAACCG
ACGTATGGTGTGGCTAGCAGCAAAAAAGTGGAATACTGTTCAGTGCATGC
TCTAGATGGGATGATCAACGTCGCAAGGAAGAAGTGCGCTGGTGATGGGT
GTTTAACGCGAGCGAGGTATGGTGTGGCTGGCAGCAATAAAGCGAAATAT
TGCGCGGTGCATGCTTCGAAAGGAATGATCAACGTCGTGGACAAAATGTG
TTCTAGTGATGGATGCGGGAAGAAACCGAGTTATGGCGTGGCCGGCAGCA
AAAAGGCGAACTTTTGCGCGGTGCATGCTTTGGAGGGTATGGTCAACGTT
TCGAGCAAGATGCGTTCTGGTAATGGATACCTTAAGCAAACATTTCATGG
TGTGTCCGGCAATAACAAAGCGGAATATTGCACGGTGCATGCTTTCGAAG
GGATGGACAAAACTCACAATGGGTGTTCTATCGTTAGATGTGTTAAGCGT
CCGAGCTACAGCGTAGCCGGCAGGAAGAACCCGAAGTACTTTGCGTTGCA
TCCTTTGGAAGGAATAACCGGCATTGCGATCCAGAAGTTTGATGGTGATA
TTTCAGCTGTAAAAAATCAGGCTAAGAGCAGGAAGCGAACG
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Coding sequence (CDS) from alignment at H-elongata_contig105608:19..809+

>mRNA_H-elongata_contig105608.464.1 ID=mRNA_H-elongata_contig105608.464.1|Name=mRNA_H-elongata_contig105608.464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig105608:19..809+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGACGTCGTGAGCAAGAGGTGTGCTGGTTATGGGTGTTTAAAGCA
ACCCAAGTATGGGTCGGCCGGCAGCAAGAAAGCGAATTACTGCGCAGTGC
ACGCTTTGGAAGGGATGGTCGACGTTGTGAACAAGAGGTGTTTTGGTGAT
GGATGTTTAAAGCAACCGACGTATGGTGTGGCTAGCAGCAAAAAAGTGGA
ATACTGTTCAGTGCATGCTCTAGATGGGATGATCAACGTCGCAAGGAAGA
AGTGCGCTGGTGATGGGTGTTTAACGCGAGCGAGGTATGGTGTGGCTGGC
AGCAATAAAGCGAAATATTGCGCGGTGCATGCTTCGAAAGGAATGATCAA
CGTCGTGGACAAAATGTGTTCTAGTGATGGATGCGGGAAGAAACCGAGTT
ATGGCGTGGCCGGCAGCAAAAAGGCGAACTTTTGCGCGGTGCATGCTTTG
GAGGGTATGGTCAACGTTTCGAGCAAGATGCGTTCTGGTAATGGATACCT
TAAGCAAACATTTCATGGTGTGTCCGGCAATAACAAAGCGGAATATTGCA
CGGTGCATGCTTTCGAAGGGATGGACAAAACTCACAATGGGTGTTCTATC
GTTAGATGTGTTAAGCGTCCGAGCTACAGCGTAGCCGGCAGGAAGAACCC
GAAGTACTTTGCGTTGCATCCTTTGGAAGGAATAACCGGCATTGCGATCC
AGAAGTTTGATGGTGATATTTCAGCTGTAAAAAATCAGGCTAAGAGCAGG
AAGCGAACGATGGTCGACGTCGTGAGCAAGAGGTGTGCTGGTTATGGGTG
TTTAAAGCAACCCAAGTATGGGTCGGCCGGCAGCAAGAAAGCGAATTACT
GCGCAGTGCACGCTTTGGAAGGGATGGTCGACGTTGTGAACAAGAGGTGT
TTTGGTGATGGATGTTTAAAGCAACCGACGTATGGTGTGGCTAGCAGCAA
AAAAGTGGAATACTGTTCAGTGCATGCTCTAGATGGGATGATCAACGTCG
CAAGGAAGAAGTGCGCTGGTGATGGGTGTTTAACGCGAGCGAGGTATGGT
GTGGCTGGCAGCAATAAAGCGAAATATTGCGCGGTGCATGCTTCGAAAGG
AATGATCAACGTCGTGGACAAAATGTGTTCTAGTGATGGATGCGGGAAGA
AACCGAGTTATGGCGTGGCCGGCAGCAAAAAGGCGAACTTTTGCGCGGTG
CATGCTTTGGAGGGTATGGTCAACGTTTCGAGCAAGATGCGTTCTGGTAA
TGGATACCTTAAGCAAACATTTCATGGTGTGTCCGGCAATAACAAAGCGG
AATATTGCACGGTGCATGCTTTCGAAGGGATGGACAAAACTCACAATGGG
TGTTCTATCGTTAGATGTGTTAAGCGTCCGAGCTACAGCGTAGCCGGCAG
GAAGAACCCGAAGTACTTTGCGTTGCATCCTTTGGAAGGAATAACCGGCA
TTGCGATCCAGAAGTTTGATGGTGATATTTCAGCTGTAAAAAATCAGGCT
AAGAGCAGGAAGCGAACG
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