mRNA_H-elongata_contig176857.4638.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176857.4638.1
Unique NamemRNA_H-elongata_contig176857.4638.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176857.4638.1 vs. uniprot
Match: D8LJ08_ECTSI (Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ08_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.480e-15
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   76 VPGKFLESIRADPWRGAFEPCVDHPLTEVQVEGKVPQGIEGTLFRNG 216
            VP  FL+SIR +PWRG  +PC+DHPLTE++V GKVP+ +EGTLFRNG
Sbjct:   64 VPEVFLQSIREEPWRGTLQPCIDHPLTEIEVTGKVPKTLEGTLFRNG 110
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BLAST of mRNA_H-elongata_contig176857.4638.1 vs. uniprot
Match: A0A7S0IJC1_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IJC1_MICPS)

HSP 1 Score: 52.8 bits (125), Expect = 6.190e-6
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   79 PGKFLESIRADPWRGAFEPCVDHPLTEVQVEGKVPQGIEGTLFRNG 216
            P   ++++ A PWRG  EPC DH L  V+VEG +P+ + G+ +R G
Sbjct:   84 PPDVVDAVDAWPWRGGLEPCGDHDLASVEVEGTIPRDLSGSFYRVG 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176857.4638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ08_ECTSI1.480e-1568.09Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S0IJC1_MICPS6.190e-643.48Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176857contigH-elongata_contig176857:624..899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue7.7e-13
Seed eggNOG ortholog2880.D8LJ08
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size273
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.3833613-UTR-H-elongata_contig176857:623..6261622930023.3833613-UTR-H-elongata_contig176857:623..626Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176857 624..626 +
1691679250.2976668-UTR-H-elongata_contig176857:623..6261691679250.2976668-UTR-H-elongata_contig176857:623..626Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176857 624..626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.3970277-CDS-H-elongata_contig176857:626..8991622930023.3970277-CDS-H-elongata_contig176857:626..899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176857 627..899 +
1691679250.3133519-CDS-H-elongata_contig176857:626..8991691679250.3133519-CDS-H-elongata_contig176857:626..899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176857 627..899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176857.4638.1prot_H-elongata_contig176857.4638.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176857 627..899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176857.4638.1

>prot_H-elongata_contig176857.4638.1 ID=prot_H-elongata_contig176857.4638.1|Name=mRNA_H-elongata_contig176857.4638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MIVTPAGAGDAIATRYYWDKPHPVVPGKFLESIRADPWRGAFEPCVDHPL
TEVQVEGKVPQGIEGTLFRNGEHHEDLVSKLYVNVNLSFK*
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mRNA from alignment at H-elongata_contig176857:624..899+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176857.4638.1 ID=mRNA_H-elongata_contig176857.4638.1|Name=mRNA_H-elongata_contig176857.4638.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig176857:624..899+ (Himanthalia elongata Himel1 dioecious)
AGTATGATCGTCACACCGGCTGGCGCTGGTGACGCCATCGCCACGAGATA
CTACTGGGACAAACCTCATCCGGTTGTACCGGGAAAGTTTCTCGAGTCGA
TTAGAGCAGATCCATGGCGTGGCGCGTTCGAGCCCTGCGTCGATCACCCC
CTTACGGAGGTCCAAGTTGAAGGCAAAGTCCCGCAGGGAATTGAAGGCAC
TCTTTTCCGCAATGGTGAGCACCATGAAGACCTCGTGTCAAAACTATATG
TGAATGTTAACCTGTCTTTCAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig176857:624..899+

>mRNA_H-elongata_contig176857.4638.1 ID=mRNA_H-elongata_contig176857.4638.1|Name=mRNA_H-elongata_contig176857.4638.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig176857:624..899+ (Himanthalia elongata Himel1 dioecious)
ATGATCGTCACACCGGCTGGCGCTGGTGACGCCATCGCCACGAGATACTA
CTGGGACAAACCTCATCCGGTTGTACCGGGAAAGTTTCTCGAGTCGATTA
GAGCAGATCCATGGCGTGGCGCGTTCGAGCCCTGCGTCGATCACCCCCTT
ACGGAGGTCCAAGTTGAAGGCAAAGTCCCGCAGGGAATTGAAGGCACTCT
TTTCCGCAATGGTGAGCACCATGAAGACCTCGTGTCAAAACTATATGTGA
ATGTTAACCTGTCTTTCAAGTAGATGATCGTCACACCGGCTGGCGCTGGT
GACGCCATCGCCACGAGATACTACTGGGACAAACCTCATCCGGTTGTACC
GGGAAAGTTTCTCGAGTCGATTAGAGCAGATCCATGGCGTGGCGCGTTCG
AGCCCTGCGTCGATCACCCCCTTACGGAGGTCCAAGTTGAAGGCAAAGTC
CCGCAGGGAATTGAAGGCACTCTTTTCCGCAATGGTGAGCACCATGAAGA
CCTCGTGTCAAAACTATATGTGAATGTTAACCTGTCTTTCAAGTAG
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