mRNA_H-elongata_contig176759.4633.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176759.4633.1
Unique NamemRNA_H-elongata_contig176759.4633.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176759.4633.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 KDDIGKRIASEESMLERLRARLHAVLQEAKVDQVALPLIGGGTLGGDG 144
            +D I KRI SEES LE+LRA+LH VLQEA+V+QVALPL+GGGTL G G
Sbjct:  924 RDGISKRIMSEESALEQLRAKLHGVLQEARVEQVALPLVGGGTLAGGG 971
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BLAST of mRNA_H-elongata_contig176759.4633.1 vs. uniprot
Match: A0A7R9VRD7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRD7_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.640e-5
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   10 IGKRIASEESMLERLRARLHAVLQEAKVDQVALPLIGGGTLGGDG 144
            + K I +EES LERLR +LH  LQ+A+V++V LP+IGGG   GDG
Sbjct:  122 VRKAINTEESALERLRGKLHETLQKARVEEVELPIIGGG---GDG 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176759.4633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRP2_ECTSI2.820e-1272.92Structural maintenance of chromosomes protein n=1 ... [more]
A0A7R9VRD7_9STRA1.640e-557.78Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176759contigH-elongata_contig176759:475..618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog2880.D8LRP2
Preferred namesmc1
KEGG koko:K06636
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
GOsGO:0000793,GO:0000819,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008278,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0022402,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0071840,GO:0098813
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0018@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.0024877-CDS-H-elongata_contig176759:474..6181622930023.0024877-CDS-H-elongata_contig176759:474..618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176759 475..618 -
1691679250.0938437-CDS-H-elongata_contig176759:474..6181691679250.0938437-CDS-H-elongata_contig176759:474..618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176759 475..618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176759.4633.1prot_H-elongata_contig176759.4633.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176759 475..618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176759.4633.1

>prot_H-elongata_contig176759.4633.1 ID=prot_H-elongata_contig176759.4633.1|Name=mRNA_H-elongata_contig176759.4633.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
KDDIGKRIASEESMLERLRARLHAVLQEAKVDQVALPLIGGGTLGGDG
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mRNA from alignment at H-elongata_contig176759:475..618-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176759.4633.1 ID=mRNA_H-elongata_contig176759.4633.1|Name=mRNA_H-elongata_contig176759.4633.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig176759:475..618- (Himanthalia elongata Himel1 dioecious)
AAAGACGATATAGGCAAGCGTATTGCCTCAGAAGAGTCCATGTTGGAGCG
ACTGAGAGCCCGACTGCACGCCGTCCTTCAGGAAGCGAAGGTTGATCAGG
TGGCGCTGCCCTTGATCGGAGGCGGTACGTTGGGCGGGGATGGG
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Coding sequence (CDS) from alignment at H-elongata_contig176759:475..618-

>mRNA_H-elongata_contig176759.4633.1 ID=mRNA_H-elongata_contig176759.4633.1|Name=mRNA_H-elongata_contig176759.4633.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig176759:475..618- (Himanthalia elongata Himel1 dioecious)
AAAGACGATATAGGCAAGCGTATTGCCTCAGAAGAGTCCATGTTGGAGCG
ACTGAGAGCCCGACTGCACGCCGTCCTTCAGGAAGCGAAGGTTGATCAGG
TGGCGCTGCCCTTGATCGGAGGCGGTACGTTGGGCGGGGATGGGAAAGAC
GATATAGGCAAGCGTATTGCCTCAGAAGAGTCCATGTTGGAGCGACTGAG
AGCCCGACTGCACGCCGTCCTTCAGGAAGCGAAGGTTGATCAGGTGGCGC
TGCCCTTGATCGGAGGCGGTACGTTGGGCGGGGATGGG
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