mRNA_H-elongata_contig176673.4628.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT) HSP 1 Score: 76.3 bits (186), Expect = 8.270e-14 Identity = 35/107 (32.71%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNE 336
EVL R C +E+ + KR L +AG + RM D+R+P I++ GE+ G R G+P KR++ + + + + + W A+D W + + TG + F A T+R+ +
Sbjct: 278 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF-EAGRTERIRQ 383
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT) HSP 1 Score: 76.3 bits (186), Expect = 9.600e-14 Identity = 35/107 (32.71%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNE 336
EVL R C +E+ + KR L +AG + RM D+R+P I++ GE+ G R G+P KR++ + + + + + W A+D W + + TG + F A T+R+ +
Sbjct: 564 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF-EAGRTERIRQ 669
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR) HSP 1 Score: 74.3 bits (181), Expect = 4.650e-13 Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 1
Query: 16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSA 312
EVL R D I + + L +AG VARM D+R+P +++ GE+ GKR +G KR++ + A I+P W AAQD +W S ++ GA+ + ++
Sbjct: 816 EVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDKIKWRSAIKNGAQSYETS 914
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT) HSP 1 Score: 72.8 bits (177), Expect = 8.430e-13 Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVF 303
EVL R C +E+ + KR L +AG + RM D+R+P I++ GE+ G R G+P KR++ + + + + + W A+D W + + TG +
Sbjct: 211 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGGSMI 306
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A8J9Z756_BRALA (Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z756_BRALA) HSP 1 Score: 70.1 bits (170), Expect = 4.240e-12 Identity = 36/115 (31.30%), Postives = 57/115 (49.57%), Query Frame = 1
Query: 16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNETNARHARE 360
EVL R + + + K +AG V RM D RIP +++ GE+ GKR G+P R++ + ++ I W A D P+W V GA++ + ST ++ AR R+
Sbjct: 93 EVLTRANMLSVHTLLEKARARWAGHVRRMDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPMDSWEVIAADRPQWRGAVHQGAQLAETRRSTLAASKREARKVRD 207
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A8J9ZFI4_BRALA (Hypp998 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZFI4_BRALA) HSP 1 Score: 57.0 bits (136), Expect = 5.410e-8 Identity = 27/87 (31.03%), Postives = 44/87 (50.57%), Query Frame = 1
Query: 100 MHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNETNARHARE 360
M D RIP +++ GE+ GKR G+P R++ + ++ I W A D P+W V GA++ + ST ++ AR R+
Sbjct: 1 MDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPVDSWEVIAADRPQWRGAVHQGAQLAETRRSTLAASKREARKVRD 87
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A8J9YSJ6_BRALA (Hypp5883 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YSJ6_BRALA) HSP 1 Score: 55.8 bits (133), Expect = 1.540e-7 Identity = 29/87 (33.33%), Postives = 41/87 (47.13%), Query Frame = 1
Query: 100 MHDDRIPNIVIRGEMVGGKRKRGQPAKRFEHRVTEYCTAVGIDPKCWMRAAQDAPEWHSKVETGAEVFMSAWSTKRVNETNARHARE 360
MHD RIP I++ GE+ KR G+P R+ E ++ I + W A D +W V G + + ST + AR ARE
Sbjct: 1 MHDQRIPKILLYGELAEEKRPSGRPKLRYNDNFKETLKSLSIPVENWEDIAPDRLQWRGAVHQGERLAETRRSTLAATKREARKARE 87
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT) HSP 1 Score: 57.0 bits (136), Expect = 4.990e-7 Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 16 EVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGGKRKRGQPAKRFEH 192
EVL R C IE+ + KR L +AG + RM D+R+P I++ GE+ G R G+P KR H
Sbjct: 294 EVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRTSH 352 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176673.4628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig176673.4628.1 >prot_H-elongata_contig176673.4628.1 ID=prot_H-elongata_contig176673.4628.1|Name=mRNA_H-elongata_contig176673.4628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp MLSYLEVLFRTDCECIEAAVMKRILHYAGRVARMHDDRIPNIVIRGEMVGback to top mRNA from alignment at H-elongata_contig176673:178..537+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig176673.4628.1 ID=mRNA_H-elongata_contig176673.4628.1|Name=mRNA_H-elongata_contig176673.4628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig176673:178..537+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig176673:178..537+ >mRNA_H-elongata_contig176673.4628.1 ID=mRNA_H-elongata_contig176673.4628.1|Name=mRNA_H-elongata_contig176673.4628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig176673:178..537+ (Himanthalia elongata Himel1 dioecious)back to top |