prot_H-elongata_contig17662.4625.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig17662.4625.1
Unique Name	prot_H-elongata_contig17662.4625.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	141

Homology

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.610e-24
Identity = 61/150 (40.67%), Postives = 90/150 (60.00%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 140
            +F+DL G     S+GG  + M+  DDF+R   ICFL+ KSDA +A R  +   + + G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  248 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 396

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.460e-24
Identity = 60/147 (40.82%), Postives = 84/147 (57.14%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGL--KIGVIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDMWN 140
            +++DL G     S+GGN + ++  DDFSR+  + FLK KSDA     K + DY T +G+  ++ +  TDG GE+ GQF    R+  IK E TP + P+YNGV ERALGL+ D  +A      +   D      LWAEA++ AC   N
Sbjct:   24 VYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-KGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN 169

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.030e-23
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 140
            +F+DL G     S+GG  + M+  DDF+R   + FLK KSDA +A R  +   + ++G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+    +A       L   V   K+DRLWAEAM +AC+  N
Sbjct:  633 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLAS-VRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAIN 781

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.870e-23
Identity = 60/146 (41.10%), Postives = 80/146 (54.79%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSE-GLKIGVIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDMWN 140
            LF++L G     S+GGN + ++  DD +R+  + FLK KSDA  A  + + DY       ++ V  TDG GE+ GQF    R+  IK+E TP   P+YNGV ERALGLL D  +A      E   D      LWAEA++ AC   N
Sbjct:  197 LFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN 342

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.670e-23
Identity = 59/150 (39.33%), Postives = 89/150 (59.33%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 140
            +F+DL G     S+GG  + M+  DDF+R   + FL+ KSDA +A R  +   + + G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  193 VFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 341

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.910e-23
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 140
            +F+DL G     S+GG  + M+  DDF+R   + FLK KSDA  A R  +   + ++G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  237 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 385

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.950e-23
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 140
            +F+DL G     S+GG  + M+  DDF+R   + FLK KSDA  A R  +   + ++G+   + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  434 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 582

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.080e-22
Identity = 59/147 (40.14%), Postives = 82/147 (55.78%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLKIG--VIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDMWN 140
            +++DL G     S+GGN + ++  DDFSR+  + FLK KSDA     K + DY T+ G+     +   DG GE+ GQF    R+  IK+E TP + P+YNGV ERALGL+ D  +A      +   D      LWAEA++ AC   N
Sbjct:  703 VYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTN-GVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN 848

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.070e-22
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK--IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 140
            +F+DL G     S+GG  + M+  DDF+R   + FL+ KSDA +A R  + + + ++G+   I ++ +D  GE+ G +F S   +L IK+E TP+++P++NGV ER LGL+ +  +A       L   V   K+DRLWAEAM +AC+  N
Sbjct:  478 VFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLAN-VRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALN 626

[Close]

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.500e-21
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 0

Query:    1 LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLINDYLTSEGLK-IGVIPTDGRGEWHG-QFLSFLRKLEIKRESTPSYAPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMWN 140
            +F+DL G     S+GG  + M+  DDF+R   + FLK +SDA  A R  +     +     + ++ +D  GE+ G +F S   +L IK+E TP+Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  315 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 463

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot

BLAST of mRNA_H-elongata_contig17662.4625.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JRL9_9PHAE	2.610e-24	40.67	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KAM7_9PHAE	4.460e-24	40.82	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K2M6_9PHAE	3.030e-23	40.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LL52_9PHAE	3.870e-23	41.10	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L3Y0_9PHAE	7.670e-23	39.33	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JBA7_9PHAE	7.910e-23	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	7.950e-23	40.00	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JAQ2_9PHAE	1.080e-22	40.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K622_9PHAE	5.070e-22	38.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JV76_9PHAE	1.500e-21	38.93	Integrase catalytic domain-containing protein (Fra...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..141 e-value: 1.6E-16 score: 62.1
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 15..111 e-value: 1.2E-11 score: 44.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..141 score: 15.148
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 2..116
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..116
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..141

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig17662	contig	H-elongata_contig17662:4..426 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig17662.4625.1	mRNA_H-elongata_contig17662.4625.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig17662 4..426 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig17662.4625.1 ID=prot_H-elongata_contig17662.4625.1|Name=mRNA_H-elongata_contig17662.4625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
LFIDLSGPFHDMSLGGNRFVMLCIDDFSRFKMICFLKQKSDATNALRKLI
NDYLTSEGLKIGVIPTDGRGEWHGQFLSFLRKLEIKRESTPSYAPQYNGV
VERALGLLRDKTVALLRGVMEGKSDRLWAEAMAYACDMWNR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf