mRNA_H-elongata_contig176614.4624.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176614.4624.1
Unique NamemRNA_H-elongata_contig176614.4624.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: D7FJH8_ECTSI (Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.530e-26
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    4 ADGKLNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLK 219
            AD  +N P+  EPLSLYK+ ENLNVAL AAE  GLQVVNIGA+DI+ GRPASILGL+WQLIR+HLLAQINLK
Sbjct:  188 ADTNVNTPTNDEPLSLYKANENLNVALEAAEKHGLQVVNIGATDIIQGRPASILGLTWQLIRIHLLAQINLK 259          
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: A0A5M3ME32_CONPW (Fimbrin n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3ME32_CONPW)

HSP 1 Score: 82.4 bits (202), Expect = 2.060e-16
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   16 LNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLKVKAKVKMHQACE 255
            LNLPSG +PL+ ++ TEN N+ +T+A+A G  VVNIG+SDI  GR   ILGL WQ+IR  LLAQ+++K+  +  +++ CE
Sbjct:  172 LNLPSGKKPLNNFQMTENNNIVITSAKAIGCSVVNIGSSDIAEGREHLILGLIWQIIRKGLLAQVDIKLHPE--LYRLCE 249          
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: A0A1Q3E9V7_LENED (Ca2+-binding actin-bundling protein n=3 Tax=Omphalotaceae TaxID=72117 RepID=A0A1Q3E9V7_LENED)

HSP 1 Score: 80.1 bits (196), Expect = 1.340e-15
Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   16 LNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLKVKAKVKMHQACE 255
            LN PSG +PL+ ++ TEN N+ +T+A+A G  VVNIG+SDI  GR   ILGL WQ+IR  LLAQ+++K+  +  +++ CE
Sbjct:  172 LNKPSGRKPLNAFQITENNNIVITSAKAIGCSVVNIGSSDIAEGREHLILGLIWQIIRRGLLAQVDIKLHPE--LYRLCE 249          
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: A0A369K4E6_HYPMA (Fimbrin n=2 Tax=Lyophyllaceae TaxID=930979 RepID=A0A369K4E6_HYPMA)

HSP 1 Score: 77.8 bits (190), Expect = 8.670e-15
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   16 LNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLKVKAKVKMHQACE 255
            LN P+  +PL+ ++ TEN N+ +T+A+A G  VVNIG+SDI  GR   ILGL WQ+IR  LLAQ+++K+  +  +++ CE
Sbjct:  171 LNKPTARKPLNAFQMTENNNIVITSAKAIGCSVVNIGSSDIAEGREHLILGLIWQIIRRGLLAQVDIKIHPE--LYRLCE 248          
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: A0A1J8PIL1_9AGAM (Uncharacterized protein n=1 Tax=Rhizopogon vesiculosus TaxID=180088 RepID=A0A1J8PIL1_9AGAM)

HSP 1 Score: 77.4 bits (189), Expect = 1.210e-14
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   16 LNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLKVKAKVKMHQACE 255
            LN PS  +PL+ ++ TEN N+ +T+A+  G  VVNIG+SDI  GR   ILGL WQ+IR  LLAQ+N+K+  +  +++ CE
Sbjct:  214 LNKPSTRKPLNAFQMTENNNIVITSAKGIGCSVVNIGSSDIAEGREHLILGLIWQVIRRGLLAQVNIKLHPE--LYRLCE 291          
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: A0A0D7B7S7_9AGAR (Ca2+-binding actin-bundling protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7B7S7_9AGAR)

HSP 1 Score: 77.0 bits (188), Expect = 1.620e-14
Identity = 37/80 (46.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   16 LNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLKVKAKVKMHQACE 255
            LN P+G +PL+ ++ TEN N+ +T+A+A G  VVNIG++D+  GR   ILGL WQ+IR  LLAQ+++K+  +  +++ CE
Sbjct:  172 LNKPNGRKPLNAFQMTENNNIVITSAKAIGCSVVNIGSTDLAEGREHLILGLIWQVIRRGLLAQVDIKLHPE--LYRLCE 249          
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: A0A5C2SVC7_9APHY (Fimbrin n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2SVC7_9APHY)

HSP 1 Score: 76.6 bits (187), Expect = 2.210e-14
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   16 LNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLKVKAKVKMHQACE 255
            LN P+  +PL+ ++ TEN N+ +T+A+A G  VVNIG SDI  GR   ILGL WQ+IR  LLAQI++K+  +  +++ CE
Sbjct:  173 LNKPTAKKPLNAFQMTENNNIVITSAKAIGCSVVNIGPSDIAEGREHLILGLIWQIIRRGLLAQIDIKLHPE--LYRLCE 250          
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: A0A4R0R5L4_9APHY (Uncharacterized protein n=2 Tax=Steccherinaceae TaxID=81059 RepID=A0A4R0R5L4_9APHY)

HSP 1 Score: 76.6 bits (187), Expect = 2.210e-14
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   16 LNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLKVKAKVKMHQACE 255
            LN P+  +PL+ ++ TEN N+ +T+A+A G  VVNIG++D++ GR   ILGL WQ+IR  LLAQ+++K+  +  +++ CE
Sbjct:  174 LNKPTARKPLNAFQMTENNNIVITSAKAIGCSVVNIGSTDLIEGREHLILGLIWQIIRRGLLAQVDIKIHPE--LYRLCE 251          
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: A0A4S8M6M0_DENBC (Uncharacterized protein n=4 Tax=Agaricales TaxID=5338 RepID=A0A4S8M6M0_DENBC)

HSP 1 Score: 76.6 bits (187), Expect = 2.210e-14
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   16 LNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLKVKAKVKMHQACE 255
            LN PSG + L+ ++ TEN N+ +T+A+A G  VVNIG+SDI  GR   ILGL WQ+IR  LLAQ+++K+  +  +++ CE
Sbjct:  172 LNKPSGRKALNAFQITENNNIVITSAKAIGCSVVNIGSSDIAEGREHLILGLIWQVIRRGLLAQVDIKLHPE--LYRLCE 249          
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Match: A0A0C3S6Q3_PHLGI (Uncharacterized protein n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3S6Q3_PHLGI)

HSP 1 Score: 76.6 bits (187), Expect = 2.210e-14
Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   16 LNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGRPASILGLSWQLIRVHLLAQINLKVKAKVKMHQACE 255
            LN P+  +PL+ ++ TEN N+ +T+A+A G  VVNIG+SD+  GR   ILGL WQ+IR  LLAQ+++K+  +  +++ CE
Sbjct:  183 LNKPNARKPLNAFQMTENNNIVITSAKAIGCSVVNIGSSDLAEGREHLILGLIWQVIRRGLLAQVDIKIHPE--LYRLCE 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176614.4624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJH8_ECTSI1.530e-2676.39Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH8... [more]
A0A5M3ME32_CONPW2.060e-1651.25Fimbrin n=1 Tax=Coniophora puteana (strain RWD-64-... [more]
A0A1Q3E9V7_LENED1.340e-1550.00Ca2+-binding actin-bundling protein n=3 Tax=Omphal... [more]
A0A369K4E6_HYPMA8.670e-1547.50Fimbrin n=2 Tax=Lyophyllaceae TaxID=930979 RepID=A... [more]
A0A1J8PIL1_9AGAM1.210e-1448.75Uncharacterized protein n=1 Tax=Rhizopogon vesicul... [more]
A0A0D7B7S7_9AGAR1.620e-1446.25Ca2+-binding actin-bundling protein n=1 Tax=Cylind... [more]
A0A5C2SVC7_9APHY2.210e-1448.75Fimbrin n=2 Tax=Lentinus tigrinus TaxID=5365 RepID... [more]
A0A4R0R5L4_9APHY2.210e-1445.00Uncharacterized protein n=2 Tax=Steccherinaceae Ta... [more]
A0A4S8M6M0_DENBC2.210e-1448.75Uncharacterized protein n=4 Tax=Agaricales TaxID=5... [more]
A0A0C3S6Q3_PHLGI2.210e-1446.25Uncharacterized protein n=1 Tax=Phlebiopsis gigant... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176614contigH-elongata_contig176614:602..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4e-22
Seed eggNOG ortholog2880.D7FJH8
EggNOG free text desc.actin filament network formation
EggNOG OGsCOG5069@1,KOG0046@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.2920256-CDS-H-elongata_contig176614:601..8681622930022.2920256-CDS-H-elongata_contig176614:601..868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176614 602..868 +
1691679249.855278-CDS-H-elongata_contig176614:601..8681691679249.855278-CDS-H-elongata_contig176614:601..868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176614 602..868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176614.4624.1prot_H-elongata_contig176614.4624.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176614 602..868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176614.4624.1

>prot_H-elongata_contig176614.4624.1 ID=prot_H-elongata_contig176614.4624.1|Name=mRNA_H-elongata_contig176614.4624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
TADGKLNLPSGGEPLSLYKSTENLNVALTAAEAAGLQVVNIGASDIMNGR
PASILGLSWQLIRVHLLAQINLKVKAKVKMHQACEGFI*
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mRNA from alignment at H-elongata_contig176614:602..868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176614.4624.1 ID=mRNA_H-elongata_contig176614.4624.1|Name=mRNA_H-elongata_contig176614.4624.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig176614:602..868+ (Himanthalia elongata Himel1 dioecious)
ACAGCCGATGGCAAACTGAACTTGCCTTCCGGCGGAGAGCCTCTAAGTCT CTACAAGTCTACGGAGAACCTTAATGTCGCGCTCACGGCGGCGGAAGCGG CTGGTCTGCAGGTGGTTAACATCGGCGCGTCAGACATCATGAACGGTCGC CCGGCCAGCATCCTCGGCCTATCGTGGCAGCTCATCCGAGTGCACCTCCT CGCTCAGATCAACCTAAAGGTAAAGGCGAAGGTTAAGATGCACCAAGCAT GCGAAGGTTTTATATGA
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Coding sequence (CDS) from alignment at H-elongata_contig176614:602..868+

>mRNA_H-elongata_contig176614.4624.1 ID=mRNA_H-elongata_contig176614.4624.1|Name=mRNA_H-elongata_contig176614.4624.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig176614:602..868+ (Himanthalia elongata Himel1 dioecious)
ACAGCCGATGGCAAACTGAACTTGCCTTCCGGCGGAGAGCCTCTAAGTCT
CTACAAGTCTACGGAGAACCTTAATGTCGCGCTCACGGCGGCGGAAGCGG
CTGGTCTGCAGGTGGTTAACATCGGCGCGTCAGACATCATGAACGGTCGC
CCGGCCAGCATCCTCGGCCTATCGTGGCAGCTCATCCGAGTGCACCTCCT
CGCTCAGATCAACCTAAAGGTAAAGGCGAAGGTTAAGATGCACCAAGCAT
GCGAAGGTTTTATATGAACAGCCGATGGCAAACTGAACTTGCCTTCCGGC
GGAGAGCCTCTAAGTCTCTACAAGTCTACGGAGAACCTTAATGTCGCGCT
CACGGCGGCGGAAGCGGCTGGTCTGCAGGTGGTTAACATCGGCGCGTCAG
ACATCATGAACGGTCGCCCGGCCAGCATCCTCGGCCTATCGTGGCAGCTC
ATCCGAGTGCACCTCCTCGCTCAGATCAACCTAAAGGTAAAGGCGAAGGT
TAAGATGCACCAAGCATGCGAAGGTTTTATATGA
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