mRNA_H-elongata_contig17649.4617.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17649.4617.1
Unique NamemRNA_H-elongata_contig17649.4617.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: D8LQV8_ECTSI (Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQV8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.630e-16
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGDSGADFNPSTS 148
            VQGFVWGLNSFDQWGVELGKKL  KVR AL +AR  GGD    FNPSTS
Sbjct:  497 VQGFVWGLNSFDQWGVELGKKLATKVRTALSTARTSGGDVSEGFNPSTS 545
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BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: A0A7W1IT88_9BACT (Glucose-6-phosphate isomerase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1IT88_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 2.530e-13
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGDSGADFNPSTS 148
            VQGFVWGLNSFDQWGVELGK L  +VR  L S+RR GG S A FNPSTS
Sbjct:  454 VQGFVWGLNSFDQWGVELGKVLAKQVRTQLASSRRAGG-SVAGFNPSTS 501
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BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: A0A7S0FBN9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FBN9_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 4.280e-13
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGDSGADFNP 139
            VQG+VWG+NSFDQWGVELGK LGVKVRK L  AR+ GGDS +   P
Sbjct:  140 VQGWVWGINSFDQWGVELGKVLGVKVRKYLSEARKGGGDSSSFPKP 185
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BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: A0A7S4SGA0_9DINO (Glucose-6-phosphate isomerase n=4 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SGA0_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 5.750e-12
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGDSGADFNP 139
            VQG+VWG+NSFDQWGVELGK LGVKVR+ L  AR+ G D+ A   P
Sbjct:  491 VQGWVWGINSFDQWGVELGKVLGVKVRRYLSEARKGGADASAFNRP 536
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BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: A0A7S2IN26_9DINO (Glucose-6-phosphate isomerase (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IN26_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 5.960e-12
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGDSGADFNPST 145
            VQG++W +NSFDQWGVELGK LGV+VRK L  AR+ GGD+ A FN  T
Sbjct:  242 VQGWIWDINSFDQWGVELGKVLGVRVRKYLSEARKGGGDASA-FNKPT 288
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BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: A0A7S2V3M3_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3M3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.850e-12
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGDSGADFNPST 145
            VQG +WG+NSFDQWGV+LGK LG+K+RK LV++R  GG S   FNP+T
Sbjct:  537 VQGAIWGVNSFDQWGVQLGKVLGIKIRKQLVASR--GGASVEGFNPAT 582
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BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: A0A7V8YFX3_9DELT (Glucose-6-phosphate isomerase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V8YFX3_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 1.030e-11
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGDSGADFNPST 145
            V+GFVWG+NSFDQWGVELGK L  KVR  LV+AR   G+    FNPST
Sbjct:  107 VEGFVWGVNSFDQWGVELGKALAGKVRAQLVAARGGNGEI-EGFNPST 153
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BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: A0A7S2Q8G9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2Q8G9_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 1.040e-11
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGD 118
            VQG+VWG+NSFDQWGVELGK LGV+VRK L  AR  GGD
Sbjct:   78 VQGWVWGINSFDQWGVELGKVLGVRVRKYLSEARTGGGD 116
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BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: A0A812YBG6_SYMPI (Glucose-6-phosphate isomerase n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812YBG6_SYMPI)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGDSGADFNP 139
            VQG+VW +NSFDQWGVELGK LGVKVRK L  AR+ GGD+     P
Sbjct:  303 VQGWVWNVNSFDQWGVELGKVLGVKVRKYLSEARKGGGDASGFQKP 348
[Close]
BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Match: A0A482SP11_9ARCH (Glucose-6-phosphate isomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP11_9ARCH)

HSP 1 Score: 65.1 bits (157), Expect = 1.320e-11
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 2 
Query:    2 VQGFVWGLNSFDQWGVELGKKLGVKVRKALVSARRDGGDSGADFNPSTS 148
            VQGF+W +NSFDQWGVELGK L   VR+AL +AR+D  +    FN STS
Sbjct:  139 VQGFIWNINSFDQWGVELGKVLAGNVRRALQTARKDQSEDVEGFNSSTS 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17649.4617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQV8_ECTSI2.630e-1677.55Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus T... [more]
A0A7W1IT88_9BACT2.530e-1375.51Glucose-6-phosphate isomerase n=1 Tax=Planctomycet... [more]
A0A7S0FBN9_9DINO4.280e-1371.74Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S4SGA0_9DINO5.750e-1267.39Glucose-6-phosphate isomerase n=4 Tax=Alexandrium ... [more]
A0A7S2IN26_9DINO5.960e-1266.67Glucose-6-phosphate isomerase (Fragment) n=1 Tax=A... [more]
A0A7S2V3M3_9STRA7.850e-1264.58Glucose-6-phosphate isomerase n=1 Tax=Fibrocapsa j... [more]
A0A7V8YFX3_9DELT1.030e-1166.67Glucose-6-phosphate isomerase n=1 Tax=Deltaproteob... [more]
A0A7S2Q8G9_9DINO1.040e-1176.92Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A812YBG6_SYMPI1.070e-1167.39Glucose-6-phosphate isomerase n=1 Tax=Symbiodinium... [more]
A0A482SP11_9ARCH1.320e-1161.22Glucose-6-phosphate isomerase n=1 Tax=archaeon Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17649contigH-elongata_contig17649:3664..5537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size155
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.5334218-CDS-H-elongata_contig17649:3663..37391622930021.5334218-CDS-H-elongata_contig17649:3663..3739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17649 3664..3739 +
1691679249.50325-CDS-H-elongata_contig17649:3663..37391691679249.50325-CDS-H-elongata_contig17649:3663..3739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17649 3664..3739 +
1622930021.5544884-CDS-H-elongata_contig17649:5459..55361622930021.5544884-CDS-H-elongata_contig17649:5459..5536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17649 5460..5536 +
1691679249.5166934-CDS-H-elongata_contig17649:5459..55361691679249.5166934-CDS-H-elongata_contig17649:5459..5536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17649 5460..5536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17649.4617.1prot_H-elongata_contig17649.4617.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17649 3664..5536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17649.4617.1

>prot_H-elongata_contig17649.4617.1 ID=prot_H-elongata_contig17649.4617.1|Name=mRNA_H-elongata_contig17649.4617.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
SAGLRVGAELVRPMGGRAWEEARRQGAQGSRFRPQGWRRFRRGLQSFHLE
P
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mRNA from alignment at H-elongata_contig17649:3664..5537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17649.4617.1 ID=mRNA_H-elongata_contig17649.4617.1|Name=mRNA_H-elongata_contig17649.4617.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1874bp|location=Sequence derived from alignment at H-elongata_contig17649:3664..5537+ (Himanthalia elongata Himel1 dioecious)
AGTGCAGGGCTTCGTGTGGGGGCTGAACTCGTTCGACCAATGGGGGGTAG
AGCTTGGGAAGAAGCTAGGCGTCAAGGTGGGGGGAAACTATGCAGGAAGC
AAAAAAATATTAAAAAATAAATTGTTAATTTTAATATTATTATTTTGGCA
GCAGGTCTGATTGATTCTCTGCCAATGAGGAAGGGCAATCAACGTGTTCG
GAAAACCTTTTTACCAGCAATGTTGCTAATTTTGCTTTTGGTGGCTCTAA
AGTATATATATATATATATATATATATACTGTACTCCTATTTTACCGGTT
AACCCCTTCTATTAGTATCAGTTCTCCTATTATAGTCTATACTATACTAA
TGGTTCTTTGCAACACGAACCCCCCCCCCAACCATCAATCGATGTCTGCA
GCAGTGAAGCCAGCCAATTTTCTCTCAACAACGTCAAACAACCATTACTT
TTATTTTTTTAAGTTTGAGGATATTTGCCATTTTTTCTTCACCGGCTTTC
CAAAAAGACAACATTGATCGCTGCAGAGAACTGCAGGGCTGGGGACTAAT
TATTAATAGAGCATGCAGCGATGTGTCTGAACATGATGAGGAAGGCGAAG
TTGAGGATAGCCTAGAGCAAATGTGCTCGTCCCGGTTTGCTCACCGTACT
GAAATAGCCACAATGTCGCCAACTTGTATCATCCAGGCGTTTTTTGCCGA
TGCCATATTATGTACCGGTATATCCTTTCTCTCGAGTTACGTTTTTTCAT
GGAGTTCGACGTTTCGTTCAGTCGGGTACTTGACTTGGCATGCGTCCCGA
CAACCACACGCAATTCTTAATTGATAATTATAACTATTATACCTTTTTAT
ATATATATTTTAATGTAGATGTCGCTTTTTACTACCGTTTTCTATTGAAT
GGAGACGACGCACTGCAGTACTTTTTACTCCCATTTCGGATGGCGTTTTT
CTTCTTCTATATAGTGACTAAAGGCTGGATCTTGACATCAGCTTATGAAT
ATGCTAGAATTCAGCCAAATAACAAATAAAAAAACACCCTTTTGGGAGGT
GTCGGAAAAGAGAGGCGCACAATAATTACTTCATGGGGTTTTGCCAGAAT
AGGCTACCCCCGTTATTCAAGCCACCTTGAGTACTGCTGGCTCAGACTCT
CGGTGGTGAACGTCATCGGTATGCAATGGCGCGATCTGATACACTCGGGA
TTGGCCTGATGTCGGTTGACGGTAGAGAGAGATGGACGCCGTCACGGAAA
GCGGGAGGAATGAGAGGACCCCTTGAGTAAGCTATAGATATCGGTGAGGA
AGATGAGCAGGTTGACGCGGGACGGGACATCCAAACCCGTCTCGCGAAAC
CACATTCTCAGGCGTGGGAATGGAGACAAGGAAACAAAAATAATTTTCCC
TTTTTATTAATTTGCATTAGACCGAGCAAACCAGCATCACACGTAAGGGG
GCGCCATGCCGGTTTGCAAATACTCCCCCCTTTTCCCTGTTCAGCTGACC
ACGAGCAGGATTTCCACATTTGTCTGCTACAGTATATATTATATAATGTA
ATGATCACACATACACGCACACAAATATGATTGAATCCTCCATTGGGAGA
ATCAATGCGAGAGTAGCCTAGAAGGACTAGCGTGACAGAGCCGGATTGCG
CGGTTACGCGCAATTGAATAAATACACATTCACACACACAGGAACAAATC
ATCCCAGTCAAGCTTCCCCCCCCCCCTCCATGCTCTCTTCCTATACATAA
TCTAATATGATTTTATCTTGTCCGTACCGCTACATCCCATCGACAGGTGC
GCAAGGCTCTCGTTTCCGCCCGCAGGGATGGAGGAGATTCAGGCGCGGAC
TTCAATCCTTCCACCTCGAGCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig17649:3664..5537+

>mRNA_H-elongata_contig17649.4617.1 ID=mRNA_H-elongata_contig17649.4617.1|Name=mRNA_H-elongata_contig17649.4617.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig17649:3664..5537+ (Himanthalia elongata Himel1 dioecious)
AGTGCAGGGCTTCGTGTGGGGGCTGAACTCGTTCGACCAATGGGGGGTAG
AGCTTGGGAAGAAGCTAGGCGTCAAGAGTGCAGGGCTTCGTGTGGGGGCT
GAACTCGTTCGACCAATGGGGGGTAGAGCTTGGGAAGAAGCTAGGCGTCA
AGGTGCGCAAGGCTCTCGTTTCCGCCCGCAGGGATGGAGGAGATTCAGGC
GCGGACTTCAATCCTTCCACCTCGAGCCTGTGCGCAAGGCTCTCGTTTCC
GCCCGCAGGGATGGAGGAGATTCAGGCGCGGACTTCAATCCTTCCACCTC
GAGCCT
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