mRNA_H-elongata_contig176293.4607.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176293.4607.1
Unique NamemRNA_H-elongata_contig176293.4607.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176293.4607.1 vs. uniprot
Match: D8LM26_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM26_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.470e-27
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:   46 MSAIPYCDHHGWRWDTGKGPSPCVGETLSFWLSVFGCLCSV-LAGNSFTVQQRASVAGSTGAKIHSAQITLSLAQAIVALTGGVLSARPTGMLCGALLLHTLGWTMA 363
            M +IPYCDHHGW W++G+GPSPC+GET SF L+    L ++ L  ++    QRA+ AGST A++H+ QITL++ QA +AL  GVL  RP GML GA LL+++ WT A
Sbjct:    1 MGSIPYCDHHGWNWESGQGPSPCMGETASFLLASSVLLYTIPLTKDTLHPFQRAAAAGSTAARVHAVQITLAIVQASIALVCGVLFVRPRGMLSGANLLYSMSWTAA 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176293.4607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM26_ECTSI2.470e-2753.27PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176293contigH-elongata_contig176293:239..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size364
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.6506302-CDS-H-elongata_contig176293:238..6011622930020.6506302-CDS-H-elongata_contig176293:238..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176293 239..601 +
1691679249.081001-CDS-H-elongata_contig176293:238..6011691679249.081001-CDS-H-elongata_contig176293:238..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176293 239..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176293.4607.1prot_H-elongata_contig176293.4607.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176293 239..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176293.4607.1

>prot_H-elongata_contig176293.4607.1 ID=prot_H-elongata_contig176293.4607.1|Name=mRNA_H-elongata_contig176293.4607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
SQPASSSLTNICATMMSAIPYCDHHGWRWDTGKGPSPCVGETLSFWLSVF
GCLCSVLAGNSFTVQQRASVAGSTGAKIHSAQITLSLAQAIVALTGGVLS
ARPTGMLCGALLLHTLGWTMA
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mRNA from alignment at H-elongata_contig176293:239..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176293.4607.1 ID=mRNA_H-elongata_contig176293.4607.1|Name=mRNA_H-elongata_contig176293.4607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=364bp|location=Sequence derived from alignment at H-elongata_contig176293:239..602+ (Himanthalia elongata Himel1 dioecious)
TCTCAACCTGCTTCAAGTAGCCTAACTAACATTTGTGCTACAATGATGAG
CGCGATACCATATTGCGACCACCACGGCTGGAGATGGGATACCGGGAAGG
GCCCTTCGCCCTGTGTGGGTGAGACTCTGTCTTTCTGGCTTTCAGTCTTT
GGCTGTCTGTGCAGCGTTCTGGCCGGTAACTCCTTCACAGTTCAACAACG
TGCCTCTGTCGCTGGAAGCACCGGGGCGAAAATCCACAGCGCCCAGATAA
CCTTGTCGCTCGCGCAAGCAATTGTCGCACTGACAGGAGGGGTTCTATCA
GCTCGGCCGACAGGCATGCTTTGCGGGGCGCTCTTGTTGCACACGCTCGG
GTGGACTATGGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig176293:239..602+

>mRNA_H-elongata_contig176293.4607.1 ID=mRNA_H-elongata_contig176293.4607.1|Name=mRNA_H-elongata_contig176293.4607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig176293:239..602+ (Himanthalia elongata Himel1 dioecious)
TCTCAACCTGCTTCAAGTAGCCTAACTAACATTTGTGCTACAATGATGAG
CGCGATACCATATTGCGACCACCACGGCTGGAGATGGGATACCGGGAAGG
GCCCTTCGCCCTGTGTGGGTGAGACTCTGTCTTTCTGGCTTTCAGTCTTT
GGCTGTCTGTGCAGCGTTCTGGCCGGTAACTCCTTCACAGTTCAACAACG
TGCCTCTGTCGCTGGAAGCACCGGGGCGAAAATCCACAGCGCCCAGATAA
CCTTGTCGCTCGCGCAAGCAATTGTCGCACTGACAGGAGGGGTTCTATCA
GCTCGGCCGACAGGCATGCTTTGCGGGGCGCTCTTGTTGCACACGCTCGG
GTGGACTATGGCGTCTCAACCTGCTTCAAGTAGCCTAACTAACATTTGTG
CTACAATGATGAGCGCGATACCATATTGCGACCACCACGGCTGGAGATGG
GATACCGGGAAGGGCCCTTCGCCCTGTGTGGGTGAGACTCTGTCTTTCTG
GCTTTCAGTCTTTGGCTGTCTGTGCAGCGTTCTGGCCGGTAACTCCTTCA
CAGTTCAACAACGTGCCTCTGTCGCTGGAAGCACCGGGGCGAAAATCCAC
AGCGCCCAGATAACCTTGTCGCTCGCGCAAGCAATTGTCGCACTGACAGG
AGGGGTTCTATCAGCTCGGCCGACAGGCATGCTTTGCGGGGCGCTCTTGT
TGCACACGCTCGGGTGGACTATGGCG
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