mRNA_H-elongata_contig17625.4606.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: A0A6H5J6M6_9PHAE (SHQ1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M6_9PHAE) HSP 1 Score: 160 bits (404), Expect = 7.850e-43 Identity = 82/121 (67.77%), Postives = 96/121 (79.34%), Query Frame = 1
Query: 1 ETCVALSGVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQVPNASLDALAARYSSATGEACLDKKRVGLDLERIEADAVGVMASG 363
ET VAL+G+RRSLIFPYLR+W+L L RDV DILAAGKRC+LRCLLQTY ++ERGEV+YLLNKLFIEDYCVWIQ+ SL ALA RY++A A + K LDLERIEADA ++A G
Sbjct: 466 ETDVALAGIRRSLIFPYLRVWELGALVARDVRDILAAGKRCILRCLLQTYALMERGEVHYLLNKLFIEDYCVWIQKASEESLAALAERYAAAA--ASITKSGACLDLERIEADAERMIAVG 584
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: D8LCQ4_ECTSI (SHQ1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ4_ECTSI) HSP 1 Score: 160 bits (406), Expect = 1.350e-42 Identity = 81/121 (66.94%), Postives = 96/121 (79.34%), Query Frame = 1
Query: 1 ETCVALSGVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQVPNASLDALAARYSSATGEACLDKKRVGLDLERIEADAVGVMASG 363
ET VAL+G+RRSLIFPYLR+W+L L RDV DILAAGKRC+LRCLLQTY ++ERGEV+YLLNKLF+EDYCVWIQ+ SL ALA RY++A + K LDLERIEADA V+A+G
Sbjct: 874 ETDVALAGIRRSLIFPYLRVWELGALVARDVRDILAAGKRCILRCLLQTYALMERGEVHYLLNKLFVEDYCVWIQKASEESLVALAERYAAAANS--ITKSGACLDLERIEADAERVIAAG 992
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: T0RQ36_SAPDV (CS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RQ36_SAPDV) HSP 1 Score: 97.1 bits (240), Expect = 1.890e-20 Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 10 VALSGVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQVPNASLDALAARYSSATGEACLDKKRVGLDLERIEA 336
VA + +RR L +P LR LA + DV DILA GKR VLRCLL+ +L + + +YLLN LF++DYCVWIQ+ +A+L LA R+ +AT + DK G L+ +EA
Sbjct: 346 VATTSLRRMLTYPLLRQHTLALRVLDDVHDILARGKRVVLRCLLRILDVLAKSDQHYLLNTLFLDDYCVWIQRQSDAALLDLAQRHKAATNKLRADKDACGWALKHMEA 454
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: A0A1V9ZCE8_9STRA (SHQ1-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCE8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 7.090e-20 Identity = 58/128 (45.31%), Postives = 74/128 (57.81%), Query Frame = 1
Query: 10 VALSGVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQVPNASLDALAARYSSATGEACLDKKRVGLDLERIEADAVGVMASGVDAVDSSEEA 393
V S +RR L +P LR LA A+ DV +IL GKR VLRCLL+ Y IL + E +YLLN L+IEDYCVWIQ + SL LA ++ A DK G L+ +EA + S D D SE++
Sbjct: 1296 VTKSNLRRMLTYPLLRQHSLACQALNDVCEILQRGKRVVLRCLLRLYDILSKSETHYLLNTLYIEDYCVWIQHQSDKSLLDLATQFKIAIKRLQDDKDLSGWGLKHMEA----ALMSASDDEDESEDS 1419
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: A0A7S3HK63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK63_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.950e-19 Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 22 GVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQ-VPNASLDALAARYSSATG 282
+RR +IFPYLR+W+LA + DV+ IL GKR VL+CLLQ + E + +YLLNK++I DYCVW+Q + + L A A Y++A G
Sbjct: 40 NLRRCIIFPYLRVWKLARKVLADVAKILFLGKRAVLKCLLQLHNTFEHTDTHYLLNKVYIGDYCVWVQNGLASDQLQAFAKLYNNAKG 127
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: A0A833SKZ9_PHYIN (SHQ1 protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SKZ9_PHYIN) HSP 1 Score: 91.7 bits (226), Expect = 1.820e-18 Identity = 51/108 (47.22%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 10 VALSGVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQVPNASLDALAARYSSATGEACLDKKRVGLDLERIE 333
V S VRR + FP+LR + LA VR+ S+IL GKR VLR LL Y I+E+ E YLLN L+I+DYCVW+Q V + L ++A T A L K G LE +E
Sbjct: 419 VVRSTVRRMITFPFLRQYDLAMRCVREASEILKRGKRVVLRALLTLYRIVEKSETQYLLNSLYIQDYCVWVQSVTDDRLRRVSAELD--THIATLKKSETGWALEELE 524
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: K1QHE0_CRAGI (Protein SHQ1 homolog n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QHE0_CRAGI) HSP 1 Score: 91.3 bits (225), Expect = 2.180e-18 Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 10 VALSGVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQVPNASLDALAARYSSATGEACLDKKRVGLDLERIE 333
V S +RRSL +P R W L++ ++DV +ILAAGK+ VL+CLL + IL Y+LN+L+I DYCVW+Q + N L LA+ T + K+ VG +LE IE
Sbjct: 183 VVRSCIRRSLCYPLYRHWDLSQTVLQDVHNILAAGKQQVLKCLLDIHSILGSSYPRYILNELYITDYCVWVQTISNKRLKTLASALEKRT----ISKEDVGFELEFIE 286
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: UPI00148A3528 (protein SHQ1 homolog isoform X1 n=5 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A3528) HSP 1 Score: 91.3 bits (225), Expect = 2.190e-18 Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 10 VALSGVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQVPNASLDALAARYSSATGEACLDKKRVGLDLERIE 333
V S +RRSL +P R W L++ ++DV +ILAAGK+ VL+CLL + IL Y+LN L+I DYCVW+Q + N L LA+ T + K+ VG +LE IE
Sbjct: 318 VVRSCIRRSLCYPLYRHWDLSQTVLQDVHNILAAGKQQVLKCLLDLHSILGSSYPRYILNDLYITDYCVWVQTISNKRLKTLASALEKRT----ISKEDVGFELESIE 421
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: A0A329SX69_9STRA (CS domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SX69_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.500e-18 Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 10 VALSGVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQVPNASLDALAARYSSATGEACLDKKRVGLDLERIE 333
V S VRR + FP+LR + LA +VR+ S+IL GKR VLR LL Y I+E+ E YLLN L+I+DYCVWIQ V + L +++A T + K G LE +E
Sbjct: 422 VVRSTVRRMITFPFLRQYDLAMRSVREASEILKRGKRVVLRALLTLYRIVEKSETQYLLNSLYIQDYCVWIQSVNDERLKSVSAELD--THISAFTKSETGWALEELE 527
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Match: A0A6A4I979_9AGAR (SHQ1-domain-containing protein n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4I979_9AGAR) HSP 1 Score: 90.9 bits (224), Expect = 2.570e-18 Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 28 RRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYGILERGEVYYLLNKLFIEDYCVWIQQVPNASLDALAARYSSATGEACLDKKRVGLDLERIEADAVGVMASGVDAVDSSEE 390
RRSL FP R + LAE DV+++L GKR + RCLL+ IL+ EVYY+ NK++++D CVWIQ + D + R + + + K+ +G DLE++EA + A G VDS +E
Sbjct: 331 RRSLAFPLYRSFTLAEKCREDVANLLLKGKRIIFRCLLEMKDILDHHEVYYVYNKVWLDDLCVWIQAYAS---DDVLTRLGNLVKDTSITKESIGWDLEQLEAAVRQMQADGEREVDSDDE 448 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17625.4606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17625.4606.1 >prot_H-elongata_contig17625.4606.1 ID=prot_H-elongata_contig17625.4606.1|Name=mRNA_H-elongata_contig17625.4606.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp ETCVALSGVRRSLIFPYLRMWQLAELAVRDVSDILAAGKRCVLRCLLQTYback to top mRNA from alignment at H-elongata_contig17625:374..2182+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17625.4606.1 ID=mRNA_H-elongata_contig17625.4606.1|Name=mRNA_H-elongata_contig17625.4606.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1809bp|location=Sequence derived from alignment at H-elongata_contig17625:374..2182+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17625:374..2182+ >mRNA_H-elongata_contig17625.4606.1 ID=mRNA_H-elongata_contig17625.4606.1|Name=mRNA_H-elongata_contig17625.4606.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig17625:374..2182+ (Himanthalia elongata Himel1 dioecious)back to top |