mRNA_H-elongata_contig176230.4605.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176230.4605.1
Unique NamemRNA_H-elongata_contig176230.4605.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: D8LEA9_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEA9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.840e-20
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEML 147
            +HHCR CG ++C ACS+FRALLPRSF +RDPQR+CQPCNARVAPLQEML
Sbjct:  252 RHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARVAPLQEML 300
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BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: A0A835Z286_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z286_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.520e-15
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEML 147
            +HHCR CG ++C++CS++++LLPRSF TRDPQRVC+ CNA +A LQE L
Sbjct:  110 KHHCRCCGGIFCASCSKYQSLLPRSFGTRDPQRVCKACNASLAHLQEHL 158
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BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: A0A150GYM9_GONPE (FYVE-type domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GYM9_GONPE)

HSP 1 Score: 68.9 bits (167), Expect = 2.570e-12
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEMLVG 153
            +HHCR CGR+YCSAC   +ALLP  +  R PQRVC+ C   +AP Q++L G
Sbjct:  249 RHHCRLCGRIYCSACCHKKALLPPKYGVRTPQRVCELCACALAPHQQLLAG 299
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BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: A0A8J4CGS1_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4CGS1_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 1.670e-11
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEMLVG 153
            +HHCR CG+++CSAC   +ALLP  +  R PQRVC+ C++ +AP Q++L G
Sbjct:  331 RHHCRLCGKIFCSACCHKKALLPPKYGIRTPQRVCELCSSVLAPHQQLLAG 381
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BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: A0A835WPF1_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WPF1_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 2.290e-11
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEMLVG 153
            +HHCR CG+++CSAC+  RALLP  +  R PQRVC+ C   +AP Q++L G
Sbjct:  346 RHHCRLCGKIFCSACAHKRALLPPKYGIRTPQRVCELCWTVLAPHQQLLAG 396
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BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: A0A835YAM0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YAM0_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 2.290e-11
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEMLVG 153
            +HHCR CG+++CSAC   RALLP  +  R PQRVC+ C++ + P Q++L G
Sbjct:  315 RHHCRLCGKIFCSACCHKRALLPPKYGVRTPQRVCELCSSVLQPHQQLLAG 365
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BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: A0A8J4B6M3_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B6M3_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 3.070e-11
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEMLVG 153
            +HHCR CG+++CSAC   +ALLP  +  R PQRVC+ C++ +AP Q++L G
Sbjct:  329 RHHCRLCGKIFCSACCFKKALLPPKYGVRTPQRVCELCSSVLAPHQQLLAG 379
[Close]
BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: A0A0E0LJ79_ORYPU (FYVE-type domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0LJ79_ORYPU)

HSP 1 Score: 65.5 bits (158), Expect = 4.260e-11
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEMLVG 153
            +HHCR CG ++C+ACS+ R LLP  F  R+PQRVC  C  R+ PLQ + + 
Sbjct:  205 RHHCRFCGGIFCTACSKGRCLLPAKFRERNPQRVCDACYDRLDPLQNLFIN 255
[Close]
BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: UPI0018AEA516 (uncharacterized protein LOC120280655 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AEA516)

HSP 1 Score: 65.1 bits (157), Expect = 5.830e-11
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEML 147
            +HHCR CG L+CS CS+ R+LLP  F T DPQRVC  C  R+  +Q +L
Sbjct:  244 RHHCRLCGGLFCSECSKGRSLLPSKFRTADPQRVCDVCGVRLESVQPLL 292
[Close]
BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Match: K3ZSN2_SETIT (FYVE-type domain-containing protein n=12 Tax=Panicoideae TaxID=147369 RepID=K3ZSN2_SETIT)

HSP 1 Score: 64.7 bits (156), Expect = 7.950e-11
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEMLVG 153
            +HHCR CG ++C+ CS+ R LLP  F  R+PQRVC  C  R+ PLQ +L+ 
Sbjct:  206 RHHCRFCGGIFCTVCSKGRCLLPVKFRERNPQRVCDACYDRLDPLQNLLIN 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176230.4605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEA9_ECTSI1.840e-2079.59FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z286_9STRA2.520e-1563.27FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A150GYM9_GONPE2.570e-1254.90FYVE-type domain-containing protein n=1 Tax=Gonium... [more]
A0A8J4CGS1_9CHLO1.670e-1150.98Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A0A835WPF1_9CHLO2.290e-1152.94Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835YAM0_9CHLO2.290e-1150.98Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J4B6M3_9CHLO3.070e-1150.98Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A0E0LJ79_ORYPU4.260e-1150.98FYVE-type domain-containing protein n=2 Tax=Oryza ... [more]
UPI0018AEA5165.830e-1155.10uncharacterized protein LOC120280655 n=1 Tax=Diosc... [more]
K3ZSN2_SETIT7.950e-1150.98FYVE-type domain-containing protein n=12 Tax=Panic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176230contigH-elongata_contig176230:260..418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue6.7e-17
Seed eggNOG ortholog2880.D8LEA9
KEGG koko:K20523
EggNOG free text desc.regulation of ruffle assembly
EggNOG OGsCOG2930@1,KOG1843@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionFYVE zinc finger
Ec32 orthologEc-00_001550.1
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.5144458-CDS-H-elongata_contig176230:259..4181622930020.5144458-CDS-H-elongata_contig176230:259..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176230 260..418 +
1691679249.0278482-CDS-H-elongata_contig176230:259..4181691679249.0278482-CDS-H-elongata_contig176230:259..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176230 260..418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176230.4605.1prot_H-elongata_contig176230.4605.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176230 260..418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176230.4605.1

>prot_H-elongata_contig176230.4605.1 ID=prot_H-elongata_contig176230.4605.1|Name=mRNA_H-elongata_contig176230.4605.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
QHHCRACGRLYCSACSRFRALLPRSFATRDPQRVCQPCNARVAPLQEMLV
GM*
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mRNA from alignment at H-elongata_contig176230:260..418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176230.4605.1 ID=mRNA_H-elongata_contig176230.4605.1|Name=mRNA_H-elongata_contig176230.4605.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig176230:260..418+ (Himanthalia elongata Himel1 dioecious)
CAGCATCACTGCCGGGCCTGTGGGCGGCTTTACTGTAGCGCGTGCAGCCG
CTTCCGCGCGCTGCTTCCTAGATCTTTCGCAACTCGGGACCCACAGCGCG
TCTGTCAACCTTGCAACGCCCGGGTGGCCCCCCTCCAGGAGATGCTTGTC
GGTATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig176230:260..418+

>mRNA_H-elongata_contig176230.4605.1 ID=mRNA_H-elongata_contig176230.4605.1|Name=mRNA_H-elongata_contig176230.4605.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig176230:260..418+ (Himanthalia elongata Himel1 dioecious)
CAGCATCACTGCCGGGCCTGTGGGCGGCTTTACTGTAGCGCGTGCAGCCG
CTTCCGCGCGCTGCTTCCTAGATCTTTCGCAACTCGGGACCCACAGCGCG
TCTGTCAACCTTGCAACGCCCGGGTGGCCCCCCTCCAGGAGATGCTTGTC
GGTATGTGACAGCATCACTGCCGGGCCTGTGGGCGGCTTTACTGTAGCGC
GTGCAGCCGCTTCCGCGCGCTGCTTCCTAGATCTTTCGCAACTCGGGACC
CACAGCGCGTCTGTCAACCTTGCAACGCCCGGGTGGCCCCCCTCCAGGAG
ATGCTTGTCGGTATGTGA
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