mRNA_H-elongata_contig176126.4603.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176126.4603.1
Unique NamemRNA_H-elongata_contig176126.4603.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176126.4603.1 vs. uniprot
Match: D7FY25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY25_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.060e-13
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 GHERTVMCLLVTRDSAVLVSGSEDGVVRSWHVASRQCVQQT--VVSKKGET 147
            GHE+ V  L VT DS+VLVS SEDG VRSWHVASRQCVQ+T  VV  KGET
Sbjct:  310 GHEKAVTSLSVTADSSVLVSSSEDGTVRSWHVASRQCVQKTEGVVGGKGET 360
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BLAST of mRNA_H-elongata_contig176126.4603.1 vs. uniprot
Match: A0A6H5JBW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.070e-12
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 GHERTVMCLLVTRDSAVLVSGSEDGVVRSWHVASRQCVQQT--VVSKKG 141
            GHE+ V  L VT DS+VLVS SEDG VRSWHVASRQCVQ+T  VV  KG
Sbjct:  241 GHEKAVTSLSVTADSSVLVSSSEDGTVRSWHVASRQCVQKTEGVVGGKG 289
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BLAST of mRNA_H-elongata_contig176126.4603.1 vs. uniprot
Match: A0A835YRW0_9STRA (Quinon protein alcohol dehydrogenase-like superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.550e-6
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 GHERTVMCLLVTRDSAVLVSGSEDGVVRSWHVASRQCVQQTVVSKKG 141
            GH++ V  L  T D + +VS +EDG VR+WHVASRQC+    V+  G
Sbjct:  223 GHQKAVTSLACTVDGSTIVSCAEDGAVRTWHVASRQCLLTVNVASAG 269
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BLAST of mRNA_H-elongata_contig176126.4603.1 vs. uniprot
Match: R7TIP4_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TIP4_CAPTE)

HSP 1 Score: 48.5 bits (114), Expect = 4.400e-5
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 GHERTVMCLLVTRDSAVLVSGSEDGVVRSWHVASRQCVQQTVVSKKG 141
            GH + V+CL ++ D ++LVSGS+D  VR W + S+QC++   +S KG
Sbjct:  195 GHVKKVLCLAISLDGSILVSGSQDTDVRMWDIHSKQCIR--TLSHKG 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176126.4603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FY25_ECTSI3.060e-1372.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW7_9PHAE7.070e-1271.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRW0_9STRA3.550e-648.94Quinon protein alcohol dehydrogenase-like superfam... [more]
R7TIP4_CAPTE4.400e-544.68Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176126contigH-elongata_contig176126:965..1129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue5.2e-08
Seed eggNOG ortholog2880.D7FY25
Preferred nameWDR18
KEGG koko:K14829,ko:K21412
GOsGO:0000003,GO:0000027,GO:0000151,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005694,GO:0005720,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006275,GO:0006325,GO:0006342,GO:0006355,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0009058,GO:0009059,GO:0009799,GO:0009855,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016072,GO:0016458,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030174,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0032993,GO:0033260,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0036387,GO:0036388,GO:0040029,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045137,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048509,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051093,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070121,GO:0070925,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0090329,GO:0097344,GO:1901360,GO:1901576,GO:1902183,GO:1902184,GO:1902299,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.rRNA processing
EggNOG OGsCOG2319@1,KOG0646@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size147
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.414214-UTR-H-elongata_contig176126:964..9821622930020.414214-UTR-H-elongata_contig176126:964..982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176126 965..982 +
1691679248.9981558-UTR-H-elongata_contig176126:964..9821691679248.9981558-UTR-H-elongata_contig176126:964..982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176126 965..982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.4313936-CDS-H-elongata_contig176126:982..11291622930020.4313936-CDS-H-elongata_contig176126:982..1129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176126 983..1129 +
1691679249.0085146-CDS-H-elongata_contig176126:982..11291691679249.0085146-CDS-H-elongata_contig176126:982..1129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176126 983..1129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176126.4603.1prot_H-elongata_contig176126.4603.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176126 983..1129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176126.4603.1

>prot_H-elongata_contig176126.4603.1 ID=prot_H-elongata_contig176126.4603.1|Name=mRNA_H-elongata_contig176126.4603.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MCLLVTRDSAVLVSGSEDGVVRSWHVASRQCVQQTVVSKKGETREKGC*
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mRNA from alignment at H-elongata_contig176126:965..1129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176126.4603.1 ID=mRNA_H-elongata_contig176126.4603.1|Name=mRNA_H-elongata_contig176126.4603.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig176126:965..1129+ (Himanthalia elongata Himel1 dioecious)
GGGCACGAGAGGACGGTGATGTGTCTGTTGGTAACGAGGGATTCGGCGGT
GCTCGTGTCCGGATCGGAAGACGGTGTCGTTCGTTCTTGGCACGTGGCCA
GCCGGCAGTGTGTTCAGCAAACGGTGGTGTCGAAAAAAGGTGAGACGAGG
GAAAAGGGATGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig176126:965..1129+

>mRNA_H-elongata_contig176126.4603.1 ID=mRNA_H-elongata_contig176126.4603.1|Name=mRNA_H-elongata_contig176126.4603.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig176126:965..1129+ (Himanthalia elongata Himel1 dioecious)
ATGTGTCTGTTGGTAACGAGGGATTCGGCGGTGCTCGTGTCCGGATCGGA
AGACGGTGTCGTTCGTTCTTGGCACGTGGCCAGCCGGCAGTGTGTTCAGC
AAACGGTGGTGTCGAAAAAAGGTGAGACGAGGGAAAAGGGATGTTGAATG
TGTCTGTTGGTAACGAGGGATTCGGCGGTGCTCGTGTCCGGATCGGAAGA
CGGTGTCGTTCGTTCTTGGCACGTGGCCAGCCGGCAGTGTGTTCAGCAAA
CGGTGGTGTCGAAAAAAGGTGAGACGAGGGAAAAGGGATGTTGA
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