prot_H-elongata_contig105554.459.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig105554.459.1
Unique Nameprot_H-elongata_contig105554.459.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length134
Homology
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A6H5J8L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L0_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 9.370e-63
Identity = 97/132 (73.48%), Postives = 115/132 (87.12%), Query Frame = 0
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQAKWF 131
            AD+FLRRQ LAMD RFK++VVLPGDDVT+ +TR T+SLRLGPGL+Q  +  ++ATRAG+LRYRPPCT+WVESNGRRY  R EDQVLG+VEDR  D+Y+VNIFGSC+ALLGMLEFDGASKRSKPNL+  +  F
Sbjct:   67 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCTYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVF 198          
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: D8LG41_ECTSI (RNA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG41_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.280e-56
Identity = 87/121 (71.90%), Postives = 105/121 (86.78%), Query Frame = 0
Query:   12 MDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQAKWF 131
            MD RFK++VVLPGDDVT+ +TR T+SLRLGPGL+Q  +  ++ATRAG+LRYRPPC++WVESNGRRY  R EDQVLG+VEDR  D+Y+VNIFGSC+ALLGMLEFDGASKRSKPNL+  +  F
Sbjct:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVF 121          
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A835YY15_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY15_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.410e-37
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 0
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGESIVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQA 128
            A++  R  G        + VVLPGD VT+  T A   L LG GL QRG+ + ATRAG LR+ PP T+WVE N RRY  + ED VLG++EDR+GD YRVNIFG  +ALL +L FDGA++R+KPNLK  A
Sbjct:   44 AEDLARGMGALKVGPQGAIVVLPGDRVTEHVTAAALKLTLGTGLAQRGDDVFATRAGTLRHAPPRTWWVEGNQRRYIPKCEDHVLGIIEDRSGDYYRVNIFGPSAALLPLLAFDGATRRNKPNLKPGA 171          
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: T0R8U7_SAPDV (KH_dom_type_1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8U7_SAPDV)

HSP 1 Score: 125 bits (314), Expect = 4.960e-33
Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 0
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGESIVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQA 128
            A+EFL     ++D  FK + VLPGDDVT+     ++ LRLG GL+  G +I +T AG+LRYRPP  +W++ N +RY    +D V+G+V DR  + YR++I  S  A LGML FDGASKR++PNL+  A
Sbjct:    2 AEEFLLSTEKSIDLAFKPATVLPGDDVTKHIANLSQKLRLGAGLIANGNAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGA 129          
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: W4FDB9_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDB9_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.060e-32
Identity = 62/126 (49.21%), Postives = 86/126 (68.25%), Query Frame = 0
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 125
            A+EFL     ++D  FK+   LPGDD+TQ  T  T+ LRLG GL+   ++ +V T AG+LRYRPP  +W++ N +RY    +D V+G+V DR  + YRV+I GS  A LGML FDGASKR++PN++
Sbjct:    2 AEEFLLTAEKSIDLAFKTRTCLPGDDITQHITNVTQKLRLGAGLVATTDNRVVCTNAGVLRYRPPNRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQ 127          
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A024TL32_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TL32_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.440e-32
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 0
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 125
            A+EFL     ++D  FK    LPGDD+TQ  T  T+ LRLG GL+   ++ +V+T AG+LRYRPP  +W++ N +RY    ED V+G++ DR  + YRV+I  S  A LGML FDGASKR++PNL+
Sbjct:    2 AEEFLLAAEKSIDLAFKPRTCLPGDDITQHITNVTQKLRLGAGLVATCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQ 127          
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A1W0A9P5_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.280e-32
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 0
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGESIVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 125
            A+EFL     ++D  FK   VLPGDDVT       + LRLG GL+  G  ++AT AG+LRYRPP  +W++ N +RY    +D V+GV+ DR  + YR++I  S  A LGML FDGASKR++PNL+
Sbjct:    2 AEEFLLSTEQSIDLSFKPLSVLPGDDVTTSIANTNQKLRLGAGLVASGTQVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQ 126          
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A6G0XI83_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.130e-31
Identity = 61/126 (48.41%), Postives = 84/126 (66.67%), Query Frame = 0
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 125
            A+EFL     ++D  F     LPGDDVTQ  T  T+ LRLG GL+   ++ +V T AG+LRYRPP  +W++ N +RY    +D V+G++ DR  + YRV+I G+  A LGML FDGASKR++PNL+
Sbjct:    2 AEEFLISTEKSVDLAFTPRTCLPGDDVTQHITNVTRKLRLGAGLIADDQNRVVCTNAGVLRYRPPNRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQ 127          
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A067BU90_SAPPC (SET domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BU90_SAPPC)

HSP 1 Score: 124 bits (311), Expect = 1.490e-31
Identity = 62/128 (48.44%), Postives = 85/128 (66.41%), Query Frame = 0
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGESIVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQA 128
            A+EFL     ++D  FK   VLPGDDVT+     ++ LRLG GL+  G +I +T AG+LRYRPP  +W++ N +RY    +D V+G+V DR  + YR++I  S  A LGML FDGASKR++PNL+  A
Sbjct:    2 AEEFLLSTEKSIDLAFKPVTVLPGDDVTKHIANLSQKLRLGAGLIANGNAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGA 129          
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A024TLH3_9STRA (Ribosomal RNA-processing protein 40 n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLH3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.630e-31
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 0
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 125
            A+EFL     ++D  FK    LPGDD+TQ  T  T+ LRLG GL+   ++ +V+T AG+LRYRPP  +W++ N +RY    ED V+G++ DR  + YRV+I  S  A LGML FDGASKR++PNL+
Sbjct:    2 AEEFLLAAEKSIDLAFKPRTCLPGDDITQHITNVTQKLRLGAGLVATCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQ 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8L0_9PHAE9.370e-6373.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG41_ECTSI1.280e-5671.90RNA binding protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A835YY15_9STRA3.410e-3754.69Ribosomal RNA-processing protein 40 n=1 Tax=Tribon... [more]
T0R8U7_SAPDV4.960e-3348.44KH_dom_type_1 domain-containing protein n=1 Tax=Sa... [more]
W4FDB9_9STRA3.060e-3249.21Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
A0A024TL32_9STRA4.440e-3249.21Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1W0A9P5_9STRA5.280e-3248.80Ribosomal RNA-processing protein 40 n=1 Tax=Thraus... [more]
A0A6G0XI83_9STRA1.130e-3148.41Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
A0A067BU90_SAPPC1.490e-3148.44SET domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A024TLH3_9STRA1.630e-3149.21Ribosomal RNA-processing protein 40 n=3 Tax=Aphano... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 14..77
e-value: 1.3E-8
score: 36.7
NoneNo IPR availableGENE3D2.40.50.140coord: 79..129
e-value: 1.8E-13
score: 52.0
NoneNo IPR availablePANTHERPTHR21321:SF1EXOSOME COMPLEX COMPONENT RRP40coord: 16..126
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 17..73
IPR041054Exosome complex exonuclease Rrp40, N-terminalPFAMPF18311Rrp40_Ncoord: 34..75
e-value: 7.6E-9
score: 35.4
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 16..126
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 75..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105554contigH-elongata_contig105554:138..802 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105554.459.1mRNA_H-elongata_contig105554.459.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig105554 138..802 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig105554.459.1 ID=prot_H-elongata_contig105554.459.1|Name=mRNA_H-elongata_contig105554.459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES
IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNI
FGSCSALLGMLEFDGASKRSKPNLKVQAKWFRA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041054Rrp40_N
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR012340NA-bd_OB-fold