mRNA_H-elongata_contig17600.4594.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17600.4594.1
Unique NamemRNA_H-elongata_contig17600.4594.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: D7FLF7_ECTSI (Probable Spc3 homolog, subunit of Signal Peptidase Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF7_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 4.880e-50
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLHQGFPDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQVG 297
            MHT WVR+NAVVFFGLTVLL LSVLTALS +LHQGFPDVRKL V KFRTFR SEGTDRLLLNIDVDADLAPAFNWN+KQLFA+VVAEY+T  NPVNQ  
Sbjct:    1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQAS 99
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: A0A835YJ42_9STRA (Signal peptidase 22kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ42_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.220e-35
Identity = 60/98 (61.22%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLHQGFPDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQV 294
            M+T+WVRLNAVVFFGLTVLLGL+++TA S +LH+G P V+ L + K ++FR+    DR ++N D++ADLAPAFNWNIKQ+F +VVAE+ TK NP+NQ+
Sbjct:    1 MNTVWVRLNAVVFFGLTVLLGLALMTATSTYLHEGHPTVKTLRLNKIKSFRSQSKVDRAIINFDLEADLAPAFNWNIKQIFVFVVAEFATKTNPLNQI 98
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: A0A6V1NT77_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NT77_HETAK)

HSP 1 Score: 124 bits (310), Expect = 9.250e-32
Identity = 58/98 (59.18%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLHQGFPDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQV 294
            M+T+WVR+NAVVFFGLTVLL L+++ A S +LH+G P+++ L V   R+ ++  G DR L++ D+DADL PAFNWNIKQLF +VVAEY T+ NP+NQV
Sbjct:    4 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKNPLNQV 101
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: A0A7S2XZ74_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ74_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.260e-30
Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLHQGFPDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQV 294
            M+TIWVRLNAVVFFG TVLL L+ + + S FLH+G P ++ L +   R+ R  +G DR+L++ D+DADL+ AFNWNIKQLF +VVAEY TK NP NQV
Sbjct:    1 MNTIWVRLNAVVFFGFTVLLCLACMCSFSTFLHKGEPHIKYLGLNTIRSMRAQKGGDRVLISFDIDADLSGAFNWNIKQLFVFVVAEYATKTNPFNQV 98
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: A0A7S4J3F9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3F9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.830e-30
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLHQGF--PDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQV 294
            MHT+WVRLNAVVFFGLTVLLGLS+L ALS   H     PDV++L ++  R+ ++  G DR LL+ D+D DL PAF+WNIKQLF YVVA Y++  NP NQ+
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLGLSILAALSKSGHSNRYRPDVKRLELKTLRSLKSHGGVDRALLSFDIDVDLRPAFHWNIKQLFVYVVASYESDTNPNNQI 100
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: A0A7S2SN40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN40_9STRA)

HSP 1 Score: 119 bits (298), Expect = 7.710e-30
Identity = 59/98 (60.20%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLHQGFPDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQV 294
            MHT+WVRLNAVVFFGLTV++ L+VLT  S   H+G+P V  L +    T RN    D  +L+ D+ ADL+PAFNWNIKQLF +VVAEY+TK NP+NQV
Sbjct:    1 MHTVWVRLNAVVFFGLTVIVVLAVLTWFSTVTHRGYPTVDTLQLNSIGTLRNHGERDIAILSFDLHADLSPAFNWNIKQLFVFVVAEYRTKTNPLNQV 98
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: A0A7S2XM83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM83_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.300e-29
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLH--QGFPDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQV 294
            MHT+WVRLNAVVFFGLTVLLGLSVL A+SA  H  +  P V KLS+ + R+ ++  G DR LL+ D+ AD+ PAF+WNIKQLF YVVA Y+T  NP NQ+
Sbjct:    5 MHTVWVRLNAVVFFGLTVLLGLSVLAAISAIGHSTRHKPVVSKLSLNQLRSLKSHGGVDRALLSFDLHADMRPAFHWNIKQLFVYVVASYETDTNPNNQI 104
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: A0A7R9WMP4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WMP4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.930e-29
Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLHQGF--PDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQVGH*R*LVPWTALLTVLLRRECSEGLNEFV 381
            MHT+WVRLNAVVFFGLTVLLGLS L A+S   H  +  P +  L +RK R+ ++  G DR LL+ D+ AD+APAF+WNIKQLF YVVA Y+T    +NQ+      V W  ++  +   +  E  N FV
Sbjct:   67 MHTLWVRLNAVVFFGLTVLLGLSCLAAVSKIGHSLYYKPVIHNLEIRKLRSLKSHGGVDRALLSFDIHADMAPAFHWNIKQLFVYVVASYETPNKKINQI------VVWDKIIEAIDPNKVIEQENLFV 189
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: B8CCG8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCG8_THAPS)

HSP 1 Score: 114 bits (286), Expect = 3.310e-28
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLH--QGFPDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQV 294
            MHT+WVRLNAVVFFGLTVLL LS+L ALS   H  +  P + KL++   R+ +N  G DR LL+ D+ AD+ PAF+WNIKQ+F YVVA YKT  NP NQV
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLCLSILAALSKIGHTRRYQPKIHKLALNNLRSVKNHGGVDRALLSFDLHADMNPAFHWNIKQIFVYVVATYKTDTNPKNQV 100
[Close]
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Match: A0A7R9UGA1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGA1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 9.550e-28
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFL-HQGFPDVRKLSVRKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQV 294
            MHTIWVRLNAVVFF  TVLL LS L A+   L H G P V  L +R+ R+ R     DR +L  D+DADL  AFNWN+KQLF +VVAEY T+ NP+NQV
Sbjct:   18 MHTIWVRLNAVVFFSFTVLLALSTLAAVQTMLFHDGQPVVHTLRLRELRSLRKHANIDRAMLTFDIDADLRGAFNWNVKQLFVFVVAEYATQTNPLNQV 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17600.4594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF7_ECTSI4.880e-5084.85Probable Spc3 homolog, subunit of Signal Peptidase... [more]
A0A835YJ42_9STRA4.220e-3561.22Signal peptidase 22kDa subunit n=1 Tax=Tribonema m... [more]
A0A6V1NT77_HETAK9.250e-3259.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZ74_9STRA1.260e-3060.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4J3F9_9STRA3.830e-3060.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2SN40_9STRA7.710e-3060.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XM83_9STRA1.300e-2962.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7R9WMP4_9STRA7.930e-2949.61Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
B8CCG8_THAPS3.310e-2860.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7R9UGA1_9STRA9.550e-2859.60Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17600contigH-elongata_contig17600:3517..4366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue6.3e-40
Seed eggNOG ortholog2880.D7FLF7
Preferred nameSPCS3
KEGG koko:K12948
KEGG Pathwayko03060,map03060
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0005911,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009506,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0030054,GO:0030154,GO:0030312,GO:0031984,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045444,GO:0046907,GO:0048869,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055044,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
EggNOG free text desc.signal peptide processing
EggNOG OGsKOG3372@1,KOG3372@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProbable Spc3 homolog, subunit of Signal Peptidase Complex
Ec32 orthologEc-12_007990.1
Exons2
Model size728
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17600.4594.1prot_H-elongata_contig17600.4594.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17600 3517..3941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.6852744-CDS-H-elongata_contig17600:3516..36191622930019.6852744-CDS-H-elongata_contig17600:3516..3619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17600 3517..3619 +
1691679248.5917578-CDS-H-elongata_contig17600:3516..36191691679248.5917578-CDS-H-elongata_contig17600:3516..3619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17600 3517..3619 +
1622930019.697841-CDS-H-elongata_contig17600:3741..39411622930019.697841-CDS-H-elongata_contig17600:3741..3941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17600 3742..3941 +
1691679248.6054938-CDS-H-elongata_contig17600:3741..39411691679248.6054938-CDS-H-elongata_contig17600:3741..3941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17600 3742..3941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.711881-UTR-H-elongata_contig17600:3941..43661622930019.711881-UTR-H-elongata_contig17600:3941..4366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17600 3942..4366 +
1691679248.6138325-UTR-H-elongata_contig17600:3941..43661691679248.6138325-UTR-H-elongata_contig17600:3941..4366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17600 3942..4366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17600.4594.1

>prot_H-elongata_contig17600.4594.1 ID=prot_H-elongata_contig17600.4594.1|Name=mRNA_H-elongata_contig17600.4594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MHTIWVRLNAVVFFGLTVLLGLSVLTALSAFLHQGFPDVRKLSVRKFRTF
RNSEGTDRLLLNIDVDADLAPAFNWNIKQLFAYVVAEYKTKANPVNQVGH
*
back to top

mRNA from alignment at H-elongata_contig17600:3517..4366+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17600.4594.1 ID=mRNA_H-elongata_contig17600.4594.1|Name=mRNA_H-elongata_contig17600.4594.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=850bp|location=Sequence derived from alignment at H-elongata_contig17600:3517..4366+ (Himanthalia elongata Himel1 dioecious)
ATGCATACGATATGGGTACGACTCAATGCGGTGGTATTTTTTGGACTAAC
AGTTCTCCTCGGACTGAGTGTGCTCACCGCACTAAGTGCCTTTCTCCACC
AAGGTGAGGACGAGCGGCACGCACGCAGCCGCAGGATAAGATCAATGAAT
AACTTTTCATTTTTCGTGATACAATTTTTGGTTGGGCTGAAATTAACTAC
TGTACACACCCGTCTGCCGCTGCAGGATTCCCGGATGTCAGAAAGCTCTC
CGTAAGAAAATTTCGGACCTTCCGAAATTCTGAGGGCACGGATCGATTGC
TTCTAAACATCGATGTTGATGCGGATCTGGCACCGGCTTTCAACTGGAAT
ATCAAGCAACTCTTTGCCTATGTTGTTGCGGAGTACAAGACAAAGGCCAA
CCCTGTTAACCAGGTGGGACACTGACGATAGTTGGTTCCCTGGACTGCAC
TTCTCACGGTGCTATTAAGGCGTGAATGTTCGGAGGGTTTAAATGAGTTC
GTATGTTTTAAAATAAAAACGATTAGCTTTCCAGCTCAACTTCTTTTGTA
CAGCATTGTGCCTGTTTTAAGGATATGTGCGACAAGTTCTTGGCCCTGAT
CGCGGGTTAATCTTGTACGCGGAATATGTTAACCAGTTGTGTATATTGTC
ATTATAGCATAAAAGTTTTTTTGCCAGTTGCGTTTAACGGGAGGTAGGTA
GCATGGTAGGATACAAACATGCTCCATCTGCGGTTCGCGCCGTACGCGCT
ACTGGCTCATATCTGCCGTATGAGCTGCAACGCATGTATCGTTAGCATAC
TCCGAAGCAATCGATTTTGACATATTTTCTCGCCTTAGCGCGTTTCCCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17600:3517..4366+

>mRNA_H-elongata_contig17600.4594.1 ID=mRNA_H-elongata_contig17600.4594.1|Name=mRNA_H-elongata_contig17600.4594.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig17600:3517..4366+ (Himanthalia elongata Himel1 dioecious)
ATGCATACGATATGGGTACGACTCAATGCGGTGGTATTTTTTGGACTAAC
AGTTCTCCTCGGACTGAGTGTGCTCACCGCACTAAGTGCCTTTCTCCACC
AAGATGCATACGATATGGGTACGACTCAATGCGGTGGTATTTTTTGGACT
AACAGTTCTCCTCGGACTGAGTGTGCTCACCGCACTAAGTGCCTTTCTCC
ACCAAGGATTCCCGGATGTCAGAAAGCTCTCCGTAAGAAAATTTCGGACC
TTCCGAAATTCTGAGGGCACGGATCGATTGCTTCTAAACATCGATGTTGA
TGCGGATCTGGCACCGGCTTTCAACTGGAATATCAAGCAACTCTTTGCCT
ATGTTGTTGCGGAGTACAAGACAAAGGCCAACCCTGTTAACCAGGTGGGA
CACTGAGATTCCCGGATGTCAGAAAGCTCTCCGTAAGAAAATTTCGGACC
TTCCGAAATTCTGAGGGCACGGATCGATTGCTTCTAAACATCGATGTTGA
TGCGGATCTGGCACCGGCTTTCAACTGGAATATCAAGCAACTCTTTGCCT
ATGTTGTTGCGGAGTACAAGACAAAGGCCAACCCTGTTAACCAGGTGGGA
CACTGA
back to top