mRNA_H-elongata_contig175919.4591.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175919.4591.1
Unique NamemRNA_H-elongata_contig175919.4591.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig175919.4591.1 vs. uniprot
Match: D7FH33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH33_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 9.850e-59
Identity = 95/134 (70.90%), Postives = 112/134 (83.58%), Query Frame = 1 
Query:    1 VEGDYGGYAWTEMMHMYFGDTALHIALKWKRYRAVKALLSMRPDWTIPNEYGVTAESLALKVYGKDIATLKDEQEHEYENDAMWVEEEAMRRLVSAEEAARERARLKFLAELHATRTVGVEEEAEILLGCGRVL 402
            VE DYGGYAWT+ MH +FGDTALHIALKWKRYRAVKA+LS+RP+WTIPNE GVTAE L L++YGK +A  KDEQE EYENDAM  EEEAMR L++AE+AAR++ARL FL   HA RT+G++ EA ILL  GRV+
Sbjct:   47 VEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRVV 180
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BLAST of mRNA_H-elongata_contig175919.4591.1 vs. uniprot
Match: A0A835Z280_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z280_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.660e-26
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 1 
Query:   13 YGGYAWTEMMHMYFGDTALHIALKWKRYRAVKALLSMRPDWTIPNEYGVTAESLALKVYGKDIATLKDEQEHEYENDAMWVEEEAMRRLVSAEEAARERARLKFLAELHATRTVGVEEEAEILLGCGRVL 402
            YG YA+T+ M ++ GDTALH+ALKW++ RA KALL +   W I N  GVTAE++ +K + K + TLK +QE EY   AM  E++ M  L++ E++ ++      L +L+  RT G  +EA +L+  GR++
Sbjct:   50 YGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRIM 179
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BLAST of mRNA_H-elongata_contig175919.4591.1 vs. uniprot
Match: A0A7S3Y2N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N4_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 5.960e-14
Identity = 52/127 (40.94%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:    1 VEGDYGGYAWTEMMHMYFGDTALHIALKWKRYRAVKALLSMRPDWTIPNEYGVTAESLALKVYGKDIATLKDEQEHEYENDAMWVEEEAMRRLVSAEEAARERARLKFLAELHATRTVGVEEEAEIL 381
            V  +YGGY WT  +H Y+GDTA+H+A+K+ R R  + LL + PD T+ N  G TA  LA   Y K I  L           A W EE   R  ++AEEA  ER RL+  AEL A       E   +L
Sbjct:   45 VGEEYGGYRWTARLHEYYGDTAVHLAIKFSRPRIFRKLLLLAPDLTLYNGQGQTAAELAESTYKKPIKALVR---------AAWEEETRDR--MAAEEAY-ERRRLREQAELDARARAARREGLRLL 159
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BLAST of mRNA_H-elongata_contig175919.4591.1 vs. uniprot
Match: A0A7S2C3Y6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Y6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.570e-10
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:   19 GYAWTEMMHMYFGDTALHIALKWKRYRAVKALLSM---RPD-----------WTIPNEYGVTAESLALKVYGKDIATLKDEQEHEYENDAMWVEEEAMRRLVSAEEAAR 303
            GYAW+   H   GDT LH+A++WKRY+A+K L  +   RPD           + + +  G TAESL    +G+ IA L  +QE     D +   EEA R+     EAAR
Sbjct:    1 GYAWSAWSHRMAGDTVLHLAMRWKRYKALKGLYRLPAQRPDGMVGAGQPFFDYDVRDVDGQTAESLVTAEFGRTIANLWTKQE----KDDIEAAEEAARQAALEAEAAR 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175919.4591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH33_ECTSI9.850e-5970.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z280_9STRA6.660e-2642.31Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y2N4_HETAK5.960e-1440.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2C3Y6_9STRA7.570e-1038.53Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175919contigH-elongata_contig175919:536..1248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.4910011-CDS-H-elongata_contig175919:535..8101622930019.4910011-CDS-H-elongata_contig175919:535..810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175919 536..810 +
1691679248.512092-CDS-H-elongata_contig175919:535..8101691679248.512092-CDS-H-elongata_contig175919:535..810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175919 536..810 +
1622930019.509678-CDS-H-elongata_contig175919:1121..12481622930019.509678-CDS-H-elongata_contig175919:1121..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175919 1122..1248 +
1691679248.5195835-CDS-H-elongata_contig175919:1121..12481691679248.5195835-CDS-H-elongata_contig175919:1121..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175919 1122..1248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175919.4591.1prot_H-elongata_contig175919.4591.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175919 536..1248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175919.4591.1

>prot_H-elongata_contig175919.4591.1 ID=prot_H-elongata_contig175919.4591.1|Name=mRNA_H-elongata_contig175919.4591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
VEGDYGGYAWTEMMHMYFGDTALHIALKWKRYRAVKALLSMRPDWTIPNE
YGVTAESLALKVYGKDIATLKDEQEHEYENDAMWVEEEAMRRLVSAEEAA
RERARLKFLAELHATRTVGVEEEAEILLGCGRVL
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mRNA from alignment at H-elongata_contig175919:536..1248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175919.4591.1 ID=mRNA_H-elongata_contig175919.4591.1|Name=mRNA_H-elongata_contig175919.4591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=713bp|location=Sequence derived from alignment at H-elongata_contig175919:536..1248+ (Himanthalia elongata Himel1 dioecious)
GTCGAGGGAGACTATGGCGGCTACGCGTGGACCGAAATGATGCACATGTA
CTTCGGCGACACGGCCCTGCACATCGCGCTCAAGTGGAAGCGCTACCGAG
CCGTTAAGGCCCTGCTTTCGATGAGGCCGGACTGGACGATTCCTAACGAA
TACGGTGTCACAGCGGAAAGTCTCGCGCTCAAAGTTTACGGAAAGGATAT
CGCAACGCTCAAGGATGAGCAGGAGCATGAGTACGAGAACGATGCTATGT
GGGTCGAGGAAGAGGCCATGAGGAGGTGCGAAAGTAGTGGTGGGAGCTCG
AAGCCTTGATCGTTATCGTCGCTTCGATTAGTGTCTACAGTCGGTCAAGA
GCATGACATCATCACTCCTAAAAAAGATAAATTGCCTTCATCGAAAACGA
CCATGTTGCAGTCCCAGCAGCTTGCCCCCCCATCAGTCGAAAAGACAACG
GCACTGATCATTATTTGTCGCGTTTCGGCCTTCGATACTCGTGTAAAAAC
TTTTGAGGGTCCGCAACAGCGACAGAGTTCTCGTCGACGCCATCAGCTCC
CACAGCGCGCGTTGACCCCGTTTCTCGACCCCTCAGACTCGTGAGTGCGG
AGGAAGCTGCCCGCGAGAGGGCCCGCCTAAAGTTCCTCGCTGAGCTCCAT
GCCACACGTACAGTGGGCGTCGAAGAGGAGGCCGAAATCCTTCTCGGATG
CGGCCGAGTCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig175919:536..1248+

>mRNA_H-elongata_contig175919.4591.1 ID=mRNA_H-elongata_contig175919.4591.1|Name=mRNA_H-elongata_contig175919.4591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig175919:536..1248+ (Himanthalia elongata Himel1 dioecious)
GTCGAGGGAGACTATGGCGGCTACGCGTGGACCGAAATGATGCACATGTA
CTTCGGCGACACGGCCCTGCACATCGCGCTCAAGTGGAAGCGCTACCGAG
CCGTTAAGGCCCTGCTTTCGATGAGGCCGGACTGGACGATTCCTAACGAA
TACGGTGTCACAGCGGAAAGTCTCGCGCTCAAAGTTTACGGAAAGGATAT
CGCAACGCTCAAGGATGAGCAGGAGCATGAGTACGAGAACGATGCTATGT
GGGTCGAGGAAGAGGCCATGAGGAGGTCGAGGGAGACTATGGCGGCTACG
CGTGGACCGAAATGATGCACATGTACTTCGGCGACACGGCCCTGCACATC
GCGCTCAAGTGGAAGCGCTACCGAGCCGTTAAGGCCCTGCTTTCGATGAG
GCCGGACTGGACGATTCCTAACGAATACGGTGTCACAGCGGAAAGTCTCG
CGCTCAAAGTTTACGGAAAGGATATCGCAACGCTCAAGGATGAGCAGGAG
CATGAGTACGAGAACGATGCTATGTGGGTCGAGGAAGAGGCCATGAGGAG
ACTCGTGAGTGCGGAGGAAGCTGCCCGCGAGAGGGCCCGCCTAAAGTTCC
TCGCTGAGCTCCATGCCACACGTACAGTGGGCGTCGAAGAGGAGGCCGAA
ATCCTTCTCGGATGCGGCCGAGTCCTCACTCGTGAGTGCGGAGGAAGCTG
CCCGCGAGAGGGCCCGCCTAAAGTTCCTCGCTGAGCTCCATGCCACACGT
ACAGTGGGCGTCGAAGAGGAGGCCGAAATCCTTCTCGGATGCGGCCGAGT
CCTC
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