mRNA_H-elongata_contig105554.459.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105554.459.1
Unique NamemRNA_H-elongata_contig105554.459.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A6H5J8L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L0_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 9.370e-63
Identity = 97/132 (73.48%), Postives = 115/132 (87.12%), Query Frame = 1 
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQAKWF 393
            AD+FLRRQ LAMD RFK++VVLPGDDVT+ +TR T+SLRLGPGL+Q  +  ++ATRAG+LRYRPPCT+WVESNGRRY  R EDQVLG+VEDR  D+Y+VNIFGSC+ALLGMLEFDGASKRSKPNL+  +  F
Sbjct:   67 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCTYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVF 198
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: D8LG41_ECTSI (RNA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG41_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.280e-56
Identity = 87/121 (71.90%), Postives = 105/121 (86.78%), Query Frame = 1 
Query:   34 MDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQAKWF 393
            MD RFK++VVLPGDDVT+ +TR T+SLRLGPGL+Q  +  ++ATRAG+LRYRPPC++WVESNGRRY  R EDQVLG+VEDR  D+Y+VNIFGSC+ALLGMLEFDGASKRSKPNL+  +  F
Sbjct:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVF 121
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A835YY15_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY15_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.410e-37
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGESIVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQA 384
            A++  R  G        + VVLPGD VT+  T A   L LG GL QRG+ + ATRAG LR+ PP T+WVE N RRY  + ED VLG++EDR+GD YRVNIFG  +ALL +L FDGA++R+KPNLK  A
Sbjct:   44 AEDLARGMGALKVGPQGAIVVLPGDRVTEHVTAAALKLTLGTGLAQRGDDVFATRAGTLRHAPPRTWWVEGNQRRYIPKCEDHVLGIIEDRSGDYYRVNIFGPSAALLPLLAFDGATRRNKPNLKPGA 171
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: T0R8U7_SAPDV (KH_dom_type_1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8U7_SAPDV)

HSP 1 Score: 125 bits (314), Expect = 4.960e-33
Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGESIVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQA 384
            A+EFL     ++D  FK + VLPGDDVT+     ++ LRLG GL+  G +I +T AG+LRYRPP  +W++ N +RY    +D V+G+V DR  + YR++I  S  A LGML FDGASKR++PNL+  A
Sbjct:    2 AEEFLLSTEKSIDLAFKPATVLPGDDVTKHIANLSQKLRLGAGLIANGNAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGA 129
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: W4FDB9_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDB9_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.060e-32
Identity = 62/126 (49.21%), Postives = 86/126 (68.25%), Query Frame = 1 
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 375
            A+EFL     ++D  FK+   LPGDD+TQ  T  T+ LRLG GL+   ++ +V T AG+LRYRPP  +W++ N +RY    +D V+G+V DR  + YRV+I GS  A LGML FDGASKR++PN++
Sbjct:    2 AEEFLLTAEKSIDLAFKTRTCLPGDDITQHITNVTQKLRLGAGLVATTDNRVVCTNAGVLRYRPPNRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQ 127
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A024TL32_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TL32_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.440e-32
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 1 
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 375
            A+EFL     ++D  FK    LPGDD+TQ  T  T+ LRLG GL+   ++ +V+T AG+LRYRPP  +W++ N +RY    ED V+G++ DR  + YRV+I  S  A LGML FDGASKR++PNL+
Sbjct:    2 AEEFLLAAEKSIDLAFKPRTCLPGDDITQHITNVTQKLRLGAGLVATCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQ 127
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A1W0A9P5_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.280e-32
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGESIVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 375
            A+EFL     ++D  FK   VLPGDDVT       + LRLG GL+  G  ++AT AG+LRYRPP  +W++ N +RY    +D V+GV+ DR  + YR++I  S  A LGML FDGASKR++PNL+
Sbjct:    2 AEEFLLSTEQSIDLSFKPLSVLPGDDVTTSIANTNQKLRLGAGLVASGTQVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQ 126
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A6G0XI83_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.130e-31
Identity = 61/126 (48.41%), Postives = 84/126 (66.67%), Query Frame = 1 
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 375
            A+EFL     ++D  F     LPGDDVTQ  T  T+ LRLG GL+   ++ +V T AG+LRYRPP  +W++ N +RY    +D V+G++ DR  + YRV+I G+  A LGML FDGASKR++PNL+
Sbjct:    2 AEEFLISTEKSVDLAFTPRTCLPGDDVTQHITNVTRKLRLGAGLIADDQNRVVCTNAGVLRYRPPNRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQ 127
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A067BU90_SAPPC (SET domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BU90_SAPPC)

HSP 1 Score: 124 bits (311), Expect = 1.490e-31
Identity = 62/128 (48.44%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGESIVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLKVQA 384
            A+EFL     ++D  FK   VLPGDDVT+     ++ LRLG GL+  G +I +T AG+LRYRPP  +W++ N +RY    +D V+G+V DR  + YR++I  S  A LGML FDGASKR++PNL+  A
Sbjct:    2 AEEFLLSTEKSIDLAFKPVTVLPGDDVTKHIANLSQKLRLGAGLIANGNAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGA 129
[Close]
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Match: A0A024TLH3_9STRA (Ribosomal RNA-processing protein 40 n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLH3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.630e-31
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 1 
Query:    1 ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES-IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNIFGSCSALLGMLEFDGASKRSKPNLK 375
            A+EFL     ++D  FK    LPGDD+TQ  T  T+ LRLG GL+   ++ +V+T AG+LRYRPP  +W++ N +RY    ED V+G++ DR  + YRV+I  S  A LGML FDGASKR++PNL+
Sbjct:    2 AEEFLLAAEKSIDLAFKPRTCLPGDDITQHITNVTQKLRLGAGLVATCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQ 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105554.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8L0_9PHAE9.370e-6373.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG41_ECTSI1.280e-5671.90RNA binding protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A835YY15_9STRA3.410e-3754.69Ribosomal RNA-processing protein 40 n=1 Tax=Tribon... [more]
T0R8U7_SAPDV4.960e-3348.44KH_dom_type_1 domain-containing protein n=1 Tax=Sa... [more]
W4FDB9_9STRA3.060e-3249.21Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
A0A024TL32_9STRA4.440e-3249.21Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1W0A9P5_9STRA5.280e-3248.80Ribosomal RNA-processing protein 40 n=1 Tax=Thraus... [more]
A0A6G0XI83_9STRA1.130e-3148.41Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
A0A067BU90_SAPPC1.490e-3148.44SET domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A024TLH3_9STRA1.630e-3149.21Ribosomal RNA-processing protein 40 n=3 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105554contigH-elongata_contig105554:138..802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue8.6e-45
Seed eggNOG ortholog2880.D8LG41
Preferred nameEXOSC3
KEGG koko:K03681,ko:K14684
KEGG TC2.A.29.23
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
GOsGO:0000018,GO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000956,GO:0001775,GO:0002164,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006310,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008298,GO:0008408,GO:0009056,GO:0009057,GO:0009791,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0016064,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016444,GO:0016445,GO:0016447,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019724,GO:0022613,GO:0030097,GO:0030145,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035166,GO:0035167,GO:0035327,GO:0042113,GO:0042254,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045190,GO:0045191,GO:0045321,GO:0045830,GO:0045911,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0046872,GO:0046914,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048534,GO:0048542,GO:0048569,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051252,GO:0051641,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071033,GO:0071034,GO:0071035,GO:0071038,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071049,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354,GO:2000026
EggNOG free text desc.nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
EggNOG OGsCOG1097@1,KOG1004@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA binding protein
Ec32 orthologEc-11_002030.1
Exons2
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.0858138-CDS-H-elongata_contig105554:137..2311622929588.0858138-CDS-H-elongata_contig105554:137..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105554 138..231 -
1691679081.5186536-CDS-H-elongata_contig105554:137..2311691679081.5186536-CDS-H-elongata_contig105554:137..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105554 138..231 -
1622929588.1060643-CDS-H-elongata_contig105554:494..8021622929588.1060643-CDS-H-elongata_contig105554:494..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105554 495..802 -
1691679081.529394-CDS-H-elongata_contig105554:494..8021691679081.529394-CDS-H-elongata_contig105554:494..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105554 495..802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105554.459.1prot_H-elongata_contig105554.459.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105554 138..802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105554.459.1

>prot_H-elongata_contig105554.459.1 ID=prot_H-elongata_contig105554.459.1|Name=mRNA_H-elongata_contig105554.459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
ADEFLRRQGLAMDARFKSSVVLPGDDVTQQSTRATKSLRLGPGLLQRGES
IVATRAGMLRYRPPCTFWVESNGRRYAGRAEDQVLGVVEDRAGDAYRVNI
FGSCSALLGMLEFDGASKRSKPNLKVQAKWFRA*
back to top

mRNA from alignment at H-elongata_contig105554:138..802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105554.459.1 ID=mRNA_H-elongata_contig105554.459.1|Name=mRNA_H-elongata_contig105554.459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=665bp|location=Sequence derived from alignment at H-elongata_contig105554:138..802- (Himanthalia elongata Himel1 dioecious)
GCCGATGAGTTCCTGCGCCGCCAGGGGCTTGCCATGGACGCTCGCTTCAA
GTCCTCGGTCGTTCTGCCGGGGGACGACGTGACGCAGCAGAGCACCCGCG
CGACAAAGAGCCTGCGACTGGGCCCGGGCCTTCTTCAGCGTGGGGAGAGT
ATCGTGGCAACTCGGGCGGGAATGCTCCGTTACCGTCCACCATGTACGTT
CTGGGTGGAGAGCAACGGTCGGAGATATGCGGGTCGGGCAGAGGATCAGG
TGCTAGGAGTCGTCGAGGACCGCGCCGGGGATGCGTACAGGGTCAACATC
TTCGGGAGGTGCGCGCGTTGTTGTGTTAATCGCGACACTTTTGCGTGGTA
ACAGGGCGACATCAACGTTACGTGGTGTGGAATAGGCTGACTACATAAAA
CATTGCTTTCTAACCTCGGTGTATCAGGTATTTTTTGCAGAGAAAGCAGC
AACATGTATTGCAACAGATTAATCCCACTAATCCTGCATGTTTCCCCCGC
TGTGGTGGGAATGACGTCGTGGCTTGTCGTGCCTTCGTCTCATTTTTTTT
TTGTCTGGCCTCGTCCGGAAGTTGTTCGGCGTTGCTCGGCATGCTGGAGT
TTGACGGTGCTTCGAAGCGGAGCAAGCCAAATCTCAAGGTACAGGCAAAA
TGGTTTAGAGCCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig105554:138..802-

>mRNA_H-elongata_contig105554.459.1 ID=mRNA_H-elongata_contig105554.459.1|Name=mRNA_H-elongata_contig105554.459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig105554:138..802- (Himanthalia elongata Himel1 dioecious)
GCCGATGAGTTCCTGCGCCGCCAGGGGCTTGCCATGGACGCTCGCTTCAA
GTCCTCGGTCGTTCTGCCGGGGGACGACGTGACGCAGCAGAGCACCCGCG
CGACAAAGAGCCTGCGACTGGGCCCGGGCCTTCTTCAGCGTGGGGAGAGT
ATCGTGGCAACTCGGGCGGGAATGCTCCGTTACCGTCCACCATGTACGTT
CTGGGTGGAGAGCAACGGTCGGAGATATGCGGGTCGGGCAGAGGATCAGG
TGCTAGGAGTCGTCGAGGACCGCGCCGGGGATGCGTACAGGGTCAACATC
TTCGGGAGGCCGATGAGTTCCTGCGCCGCCAGGGGCTTGCCATGGACGCT
CGCTTCAAGTCCTCGGTCGTTCTGCCGGGGGACGACGTGACGCAGCAGAG
CACCCGCGCGACAAAGAGCCTGCGACTGGGCCCGGGCCTTCTTCAGCGTG
GGGAGAGTATCGTGGCAACTCGGGCGGGAATGCTCCGTTACCGTCCACCA
TGTACGTTCTGGGTGGAGAGCAACGGTCGGAGATATGCGGGTCGGGCAGA
GGATCAGGTGCTAGGAGTCGTCGAGGACCGCGCCGGGGATGCGTACAGGG
TCAACATCTTCGGGAGTTGTTCGGCGTTGCTCGGCATGCTGGAGTTTGAC
GGTGCTTCGAAGCGGAGCAAGCCAAATCTCAAGGTACAGGCAAAATGGTT
TAGAGCCTAGTTGTTCGGCGTTGCTCGGCATGCTGGAGTTTGACGGTGCT
TCGAAGCGGAGCAAGCCAAATCTCAAGGTACAGGCAAAATGGTTTAGAGC
CTAG
back to top