mRNA_H-elongata_contig175623.4580.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: D7G7D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D0_ECTSI) HSP 1 Score: 119 bits (299), Expect = 2.090e-32 Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
WEEMGGNFLLRPP Q PKAL+HFLGGAFVGAAPHL YN LLSGL E GFLVV TPYPLGFDYL +
Sbjct: 143 WEEMGGNFLLRPPDDQAPKALVHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLNL 208
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A6H5KE48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE48_9PHAE) HSP 1 Score: 120 bits (302), Expect = 4.660e-31 Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
WEEMGGNFLLRPP Q PKAL+HFLGGAFVGAAPHL YN LLSGL E GFLVV TPYPLGFDYL V
Sbjct: 54 WEEMGGNFLLRPPDDQAPKALVHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLNV 119
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A4D9DB40_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DB40_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.670e-24 Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQT--PKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
WEE+GGNFLLRPP +T PKA+LHFLGGAFVGAAPHL Y LL+GL E+G+LVV TPY L FDY+ V
Sbjct: 202 WEEIGGNFLLRPPDHETSPPKAVLHFLGGAFVGAAPHLTYRYLLTGLAEQGYLVVATPYNLSFDYVQV 269
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A0G4G6R9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G6R9_VITBC) HSP 1 Score: 101 bits (251), Expect = 1.990e-23 Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYL 192
WEEM GNFLLRPP P+AL+HFLGGAFVGAAPHL Y L+GL E+GFLVV +PY L FDYL
Sbjct: 389 WEEMSGNFLLRPPPDLRPRALIHFLGGAFVGAAPHLTYRYFLTGLAEQGFLVVASPYRLSFDYL 452
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A0G4HPX5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HPX5_9ALVE) HSP 1 Score: 100 bits (250), Expect = 2.450e-23 Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
WE GNFLLRPP G+ PKALLHFLGGAFVGA+PH+ Y LL L ERG+LV+ TPY L FDYL++
Sbjct: 106 WEPFNGNFLLRPPEGRRPKALLHFLGGAFVGASPHIGYRFLLERLAERGYLVLATPYKLNFDYLSM 171
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7S0CE30_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE30_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.690e-22 Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLT 195
WEEM GN++L PP Q P+AL+HFLGGAFVGAAPH+AY +L L +RG+L+V TP+ L FDYLT
Sbjct: 29 WEEMHGNYVLAPPSMQQPRALIHFLGGAFVGAAPHVAYRYILERLSDRGYLIVATPFNLSFDYLT 93
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7R9U991_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U991_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 2.550e-21 Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
WEE+GGN +LRPP G P+A++HFLGGAFVGA P +AY LL L + GFL+V TPY L FDYL +
Sbjct: 174 WEELGGNLVLRPPDGAQPRAVIHFLGGAFVGATPAIAYRYLLQNLAKEGFLIVATPYKLQFDYLKI 239
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7S1U6M1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6M1_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 6.000e-20 Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
WE++GGN +LRPP GQ +A++HFLGGAFVGA P LAY LL L GF++V TPY L FDYL++
Sbjct: 188 WEDIGGNLVLRPPEGQEARAVVHFLGGAFVGATPSLAYRYLLKRLAAEGFVIVATPYKLEFDYLSI 253
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7S2LK51_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LK51_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 8.670e-20 Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLT 195
WEE+ GN++LRPP Q P+ALLHFLGGA VGA+P L Y LL L G+L+V TPY L FD+LT
Sbjct: 170 WEELHGNYILRPPPSQPPRALLHFLGGALVGASPQLTYRYLLERLSSNGYLIVATPYQLSFDHLT 234
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Match: A0A7S0VVT9_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VVT9_9CRYP) HSP 1 Score: 88.2 bits (217), Expect = 2.700e-19 Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 WEEMGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVGTPYPLGFDYLTV 198
WE +GG+F L PP G + ++HFLGGAFVGAAPHL+Y LL L + G+ VV TPY L FDYL V
Sbjct: 8 WEALGGSFALEPPEGVPVRGVVHFLGGAFVGAAPHLSYRFLLESLADEGYAVVATPYKLSFDYLRV 73 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175623.4580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig175623.4580.1 >prot_H-elongata_contig175623.4580.1 ID=prot_H-elongata_contig175623.4580.1|Name=mRNA_H-elongata_contig175623.4580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp MGGNFLLRPPGGQTPKALLHFLGGAFVGAAPHLAYNCLLSGLGERGFLVVback to top mRNA from alignment at H-elongata_contig175623:1108..1308+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig175623.4580.1 ID=mRNA_H-elongata_contig175623.4580.1|Name=mRNA_H-elongata_contig175623.4580.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig175623:1108..1308+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig175623:1108..1308+ >mRNA_H-elongata_contig175623.4580.1 ID=mRNA_H-elongata_contig175623.4580.1|Name=mRNA_H-elongata_contig175623.4580.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig175623:1108..1308+ (Himanthalia elongata Himel1 dioecious)back to top |