mRNA_H-elongata_contig174807.4547.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174807.4547.1
Unique NamemRNA_H-elongata_contig174807.4547.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig174807.4547.1 vs. uniprot
Match: D8LIH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH4_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 5.720e-7
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    7 RQVSDQLLASTNDMLLNASAIGRCLQEMGAGFAD 108
            ++V D+++ASTN M+LNA+AIGRCLQEMG+G AD
Sbjct:  154 KRVCDEIVASTNHMILNATAIGRCLQEMGSGVAD 187
[Close]
BLAST of mRNA_H-elongata_contig174807.4547.1 vs. uniprot
Match: A0A6H5J880_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J880_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.330e-7
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    7 RQVSDQLLASTNDMLLNASAIGRCLQEMGAGFAD 108
            ++V D+++ASTN M+LNA+AIGRCLQEMG+G AD
Sbjct:  457 KRVCDEIVASTNHMILNATAIGRCLQEMGSGVAD 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174807.4547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH4_ECTSI5.720e-767.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J880_9PHAE8.330e-767.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174807contigH-elongata_contig174807:754..882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003660.1
Exons1
Model size129
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.6471353-CDS-H-elongata_contig174807:753..8821622930013.6471353-CDS-H-elongata_contig174807:753..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174807 754..882 +
1691679246.2884169-CDS-H-elongata_contig174807:753..8821691679246.2884169-CDS-H-elongata_contig174807:753..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174807 754..882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174807.4547.1prot_H-elongata_contig174807.4547.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174807 754..882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174807.4547.1

>prot_H-elongata_contig174807.4547.1 ID=prot_H-elongata_contig174807.4547.1|Name=mRNA_H-elongata_contig174807.4547.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MKRQVSDQLLASTNDMLLNASAIGRCLQEMGAGFADVSAALA*
back to top

mRNA from alignment at H-elongata_contig174807:754..882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174807.4547.1 ID=mRNA_H-elongata_contig174807.4547.1|Name=mRNA_H-elongata_contig174807.4547.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig174807:754..882+ (Himanthalia elongata Himel1 dioecious)
ATGAAACGACAGGTGAGTGATCAGCTCTTGGCATCGACCAACGACATGCT
GCTCAACGCAAGCGCCATCGGCAGATGTCTCCAAGAGATGGGAGCAGGCT
TCGCCGACGTGAGTGCGGCTCTTGCTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig174807:754..882+

>mRNA_H-elongata_contig174807.4547.1 ID=mRNA_H-elongata_contig174807.4547.1|Name=mRNA_H-elongata_contig174807.4547.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig174807:754..882+ (Himanthalia elongata Himel1 dioecious)
ATGAAACGACAGGTGAGTGATCAGCTCTTGGCATCGACCAACGACATGCT
GCTCAACGCAAGCGCCATCGGCAGATGTCTCCAAGAGATGGGAGCAGGCT
TCGCCGACGTGAGTGCGGCTCTTGCTTGAATGAAACGACAGGTGAGTGAT
CAGCTCTTGGCATCGACCAACGACATGCTGCTCAACGCAAGCGCCATCGG
CAGATGTCTCCAAGAGATGGGAGCAGGCTTCGCCGACGTGAGTGCGGCTC
TTGCTTGA
back to top