mRNA_H-elongata_contig174795.4546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174795.4546.1
Unique NamemRNA_H-elongata_contig174795.4546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig174795.4546.1 vs. uniprot
Match: D8LSJ5_ECTSI (Erf4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ5_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.810e-29
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 GLSSAYDDTYPPELEGLLSKEEWLSDIGKINSALLDRFPCITCRVQAYLCCPCTLGLSLLSVRSQGKEIERG 216
            G+SSAYDD YPPEL+G ++ EEW   IG+IN AL+DRFPC  CR+QAY  CPCTLGLSLLS+R + KEIERG
Sbjct:   28 GISSAYDDQYPPELDGWMTTEEWFECIGRINRALMDRFPCGLCRLQAYCFCPCTLGLSLLSMRKEAKEIERG 99
[Close]
BLAST of mRNA_H-elongata_contig174795.4546.1 vs. uniprot
Match: A0A5D6XGB5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGB5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.200e-14
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 GLSSAYDDTYPPELEGLLSKEEWLSDIGKINSALLDRFPCITCRVQAYLCCPCTLGLSLLSVRSQGKEIER 213
            G++ AYDD +PPEL  L+  E++ + I +IN+ L D +PC  C    YLCCPCTLG SLL      K+ E+
Sbjct:   42 GIARAYDDAFPPELSHLVKHEDFETAINQINNTLRDYWPCALCVCWGYLCCPCTLGASLLCPNLCIKDAEQ 112
[Close]
BLAST of mRNA_H-elongata_contig174795.4546.1 vs. uniprot
Match: A0A1V9Z5W3_9STRA (Erf4 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5W3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.790e-12
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 GLSSAYDDTYPPELEGLLSKEEWLSDIGKINSALLDRFPCITCRVQAYLCCPCTLGLSLL 180
            G+S AYDD +PPEL+G + + ++   I +IN+ L D +PC+ C    Y CC CT GLSLL
Sbjct:   19 GISRAYDDEFPPELQGRVDETQFTHAINQINNTLTDYWPCLFCVCYGYACCICTGGLSLL 78
[Close]
BLAST of mRNA_H-elongata_contig174795.4546.1 vs. uniprot
Match: A0A835YUQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.450e-11
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 GLSSAYDDTYPPELEGLLSKEEWLSDIGKIN---SALLDRFPCITCRVQAYLCCPCTLGLSLLSVRSQGKEIERG 216
            GLSS+YDD  PPEL   + +E+W + + +IN   + +LD       +  A+LCCPCTLGLSL   RS+  ++ERG
Sbjct:   27 GLSSSYDDAMPPELGDYIGQEQWDTAMDRINRQATTVLDSL--WNQKANAWLCCPCTLGLSLCIYRSESLDMERG 99
[Close]
BLAST of mRNA_H-elongata_contig174795.4546.1 vs. uniprot
Match: A0A1V9ZXK3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXK3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 7.320e-6
Identity = 29/73 (39.73%), Postives = 38/73 (52.05%), Query Frame = 1 
Query:    1 GLSSAYDDTYPPELEGLLSKEE-------------WLSDIGKINSALLDRFPCITCRVQAYLCCPCTLGLSLL 180
            GLS AYDD +P EL  L+ ++              +   I +IN+ L D +PC+ C    Y CC CT GLSLL
Sbjct:  238 GLSRAYDDEFPSELNQLVREDTMRPCVIASVDEAYFHHAINQINNTLTDYWPCLFCVCCGYACCVCTGGLSLL 310
[Close]
BLAST of mRNA_H-elongata_contig174795.4546.1 vs. uniprot
Match: A0A482STL6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STL6_9ARCH)

HSP 1 Score: 50.1 bits (118), Expect = 1.300e-5
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    1 GLSSAYDDTYPPE-LEGLLSKEEWLSDIGKINSALLDRFPCITCRVQAYLCCPCTLGLSLL 180
            G+SS Y   +P E L+ ++++EE+L  I ++N  + D +PC       Y CC CTLGLS+L
Sbjct:   30 GISSTYSCQFPAEALKHVMTREEFLDVITRLNETIRDYWPCNPVYYLGYGCCLCTLGLSVL 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174795.4546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LSJ5_ECTSI5.810e-2969.44Erf4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A5D6XGB5_9STRA4.200e-1446.48Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A1V9Z5W3_9STRA6.790e-1248.33Erf4 domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A835YUQ2_9STRA1.450e-1145.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9ZXK3_9STRA7.320e-639.73Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A482STL6_9ARCH1.300e-540.98Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174795contigH-elongata_contig174795:381..1008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog42099.EPrPV00000020294
EggNOG free text desc.function. Source PGD
EggNOG OGs1MHGR@121069,2C81U@1,2S33K@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.576669-CDS-H-elongata_contig174795:380..5041622930013.576669-CDS-H-elongata_contig174795:380..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174795 381..504 -
1691679246.2709937-CDS-H-elongata_contig174795:380..5041691679246.2709937-CDS-H-elongata_contig174795:380..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174795 381..504 -
1622930013.5920396-CDS-H-elongata_contig174795:913..10081622930013.5920396-CDS-H-elongata_contig174795:913..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174795 914..1008 -
1691679246.2806687-CDS-H-elongata_contig174795:913..10081691679246.2806687-CDS-H-elongata_contig174795:913..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174795 914..1008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174795.4546.1prot_H-elongata_contig174795.4546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174795 381..1008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174795.4546.1

>prot_H-elongata_contig174795.4546.1 ID=prot_H-elongata_contig174795.4546.1|Name=mRNA_H-elongata_contig174795.4546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
GLSSAYDDTYPPELEGLLSKEEWLSDIGKINSALLDRFPCITCRVQAYLC
CPCTLGLSLLSVRSQGKEIERGT
back to top

mRNA from alignment at H-elongata_contig174795:381..1008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174795.4546.1 ID=mRNA_H-elongata_contig174795.4546.1|Name=mRNA_H-elongata_contig174795.4546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=628bp|location=Sequence derived from alignment at H-elongata_contig174795:381..1008- (Himanthalia elongata Himel1 dioecious)
GGACTGTCATCAGCCTACGACGATACCTACCCGCCCGAGCTCGAGGGACT
GCTCAGCAAGGAGGAGTGGCTTAGTGATATAGGGAAAATAAACAGGTAAA
TGGGCTTTCAACTCGCGCACACACACACACAGATGCGTTGGTTAGTCCGC
ATGTCATGCGCGTGTAACTTCAGCTACCCTCTGTTCAAGAACATACTAAT
ATTTCATACAGTTCTGAGTACGTATGTGCCGAAAAATACGCTTGACTATT
TCACGAATGCCGTGCGCACCTTCGCCCATTGATGGCACACAACAAAGGTT
GGAGCTTCACCAGTCAATGTAGACAACGAAATCCCTGTCCGCTTCCTATC
AGTCGAGTGGACTGGCGCCGCCATCTTCCCCCCTTCCCTTGACGTCTGAT
TTTTGGCTTGAGTCTAACCATATCCTACTTTTATCGTCTTACTAGCTATT
TCGCTTCCCAACGTGCGCACGTTCTTGTCTCGATATTCGTTTTTCCCTGT
TCAGCGCACTGCTGGACCGATTTCCGTGCATAACGTGCCGTGTGCAAGCA
TATCTATGCTGTCCCTGCACGCTAGGCTTGTCCCTCCTCAGCGTGAGATC
CCAGGGAAAGGAGATTGAACGAGGTACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig174795:381..1008-

>mRNA_H-elongata_contig174795.4546.1 ID=mRNA_H-elongata_contig174795.4546.1|Name=mRNA_H-elongata_contig174795.4546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig174795:381..1008- (Himanthalia elongata Himel1 dioecious)
GGACTGTCATCAGCCTACGACGATACCTACCCGCCCGAGCTCGAGGGACT
GCTCAGCAAGGAGGAGTGGCTTAGTGATATAGGGAAAATAAACAGGGACT
GTCATCAGCCTACGACGATACCTACCCGCCCGAGCTCGAGGGACTGCTCA
GCAAGGAGGAGTGGCTTAGTGATATAGGGAAAATAAACAGCGCACTGCTG
GACCGATTTCCGTGCATAACGTGCCGTGTGCAAGCATATCTATGCTGTCC
CTGCACGCTAGGCTTGTCCCTCCTCAGCGTGAGATCCCAGGGAAAGGAGA
TTGAACGAGGTACGCGCACTGCTGGACCGATTTCCGTGCATAACGTGCCG
TGTGCAAGCATATCTATGCTGTCCCTGCACGCTAGGCTTGTCCCTCCTCA
GCGTGAGATCCCAGGGAAAGGAGATTGAACGAGGTACG
back to top