mRNA_H-elongata_contig174676.4544.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174676.4544.1
Unique NamemRNA_H-elongata_contig174676.4544.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig174676.4544.1 vs. uniprot
Match: A0A6H5KWT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT1_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.470e-17
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 YINLKSDNGEHDMASFVSCRPLSQKPRRK-----GRERLSPWYVLLKVCLPSTIGLVKEPQLLDEMYSRSAME 204
            Y+NLKS       +SFVS R LS++P R      G ERL PWYVLLKVCLPS +GL+KEP+LL ++YSR A E
Sbjct:  605 YVNLKS-KVRRWTSSFVSIRSLSKRPERAPEQRFGHERLPPWYVLLKVCLPSALGLIKEPELLQQLYSRKAAE 676
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BLAST of mRNA_H-elongata_contig174676.4544.1 vs. uniprot
Match: D7FN90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN90_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.080e-16
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 YINLKSDNGEHDMASFVSCRPLSQKPRRK-----GRERLSPWYVLLKVCLPSTIGLVKEPQLLDEMYSRSAME 204
            Y+NLKS       +SFVS R LS +P R      G E L PWYVLLKVCLPS +GL+KEP+LL ++YS+ A E
Sbjct:  130 YVNLKS-KVRRWTSSFVSIRSLSNRPERAHEQRVGHEHLPPWYVLLKVCLPSALGLIKEPELLQQLYSKKAAE 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174676.4544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWT1_9PHAE3.470e-1757.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN90_ECTSI1.080e-1654.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174676contigH-elongata_contig174676:105..1138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003410.1
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.261842-CDS-H-elongata_contig174676:104..2001622930013.261842-CDS-H-elongata_contig174676:104..200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174676 105..200 +
1691679246.201324-CDS-H-elongata_contig174676:104..2001691679246.201324-CDS-H-elongata_contig174676:104..200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174676 105..200 +
1622930013.273899-CDS-H-elongata_contig174676:1030..11381622930013.273899-CDS-H-elongata_contig174676:1030..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174676 1031..1138 +
1691679246.2243133-CDS-H-elongata_contig174676:1030..11381691679246.2243133-CDS-H-elongata_contig174676:1030..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174676 1031..1138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174676.4544.1prot_H-elongata_contig174676.4544.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174676 105..1138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174676.4544.1

>prot_H-elongata_contig174676.4544.1 ID=prot_H-elongata_contig174676.4544.1|Name=mRNA_H-elongata_contig174676.4544.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
YINLKSDNGEHDMASFVSCRPLSQKPRRKGRERLSPWYVLLKVCLPSTIG
LVKEPQLLDEMYSRSAME
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mRNA from alignment at H-elongata_contig174676:105..1138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174676.4544.1 ID=mRNA_H-elongata_contig174676.4544.1|Name=mRNA_H-elongata_contig174676.4544.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1034bp|location=Sequence derived from alignment at H-elongata_contig174676:105..1138+ (Himanthalia elongata Himel1 dioecious)
TACATCAATCTCAAGAGTGACAACGGGGAGCACGACATGGCGTCATTTGT
TTCATGTCGACCGCTTTCTCAGAAACCCAGGAGGAAGGGACGCGAGGTGA
GATCGTGAGATGTAAGAAACTATTCTAGAGACTCTAACCTCGGCACGACT
ATAGCACGATTTGTTCACGCACGTGTGTACTGTGCTGAACAATTGGACAA
TACCGTGTGGTCGATGTCATTAGACTTGTCGACGTACCGTCTCAATCTTC
GCTGTAGAATCTTACACTAGATAAAACCCCGTTTCACGTAAAAACATATA
TACTAGATTCCCTTCTCTCATCTTTTCGCCCCTCCGATTACTCTTTTACG
CTATACCNNNNNNNNNNGACGTACCGTCTCAATCTTCGCTGTAGAATCTT
ACACTAGATAAAAACCCCGTTTCACGTAAAAACATATATTGTAGATTCCC
TTCTCTCATCTTTTCGCCCCTCCGATTACTCTTTTACGCTATACCTAGAA
AATAACTGAACCTTTTGCATAAGAGAGGAAGCTCAAGCAAAAAACAGCGT
ACAGTACAGTGTAGTATCGTACATAGCAGTCTATTACCAGCTGCAGCAAG
TTGCAGCGCAATCAGGTGTTTCTGGTCGCCGATGTCTCTTGAACGTTCGC
CCTCCGTCGATACCCTCGTACTCTGCACCCAAATGTCTAATATATGTTTT
AACCGTGAAATATATGTGTTATTGTGATTTACCCACGTTTACTAAATAGT
TTATTCTTACCCTAGATCCTCTGACAATGTAATATAGTAGTAATGTGTTT
GTCTCAGAACCGCAACGGATGTTTTTGTATCTATTTATGTATATTTGTTG
CAATGTGTCTTGGCTCCGCGGCTGTCGTCCAATCCCCAATCTCCATTTCC
CTTTCTCGGTCTTCCCCTCTCTCTAGCGGTTGTCGCCGTGGTACGTGCTG
CTAAAGGTTTGCCTGCCTTCTACCATCGGTCTTGTGAAAGAGCCTCAGCT
TCTCGACGAAATGTACAGCCGCTCGGCAATGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig174676:105..1138+

>mRNA_H-elongata_contig174676.4544.1 ID=mRNA_H-elongata_contig174676.4544.1|Name=mRNA_H-elongata_contig174676.4544.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig174676:105..1138+ (Himanthalia elongata Himel1 dioecious)
TACATCAATCTCAAGAGTGACAACGGGGAGCACGACATGGCGTCATTTGT
TTCATGTCGACCGCTTTCTCAGAAACCCAGGAGGAAGGGACGCGAGTACA
TCAATCTCAAGAGTGACAACGGGGAGCACGACATGGCGTCATTTGTTTCA
TGTCGACCGCTTTCTCAGAAACCCAGGAGGAAGGGACGCGAGCGGTTGTC
GCCGTGGTACGTGCTGCTAAAGGTTTGCCTGCCTTCTACCATCGGTCTTG
TGAAAGAGCCTCAGCTTCTCGACGAAATGTACAGCCGCTCGGCAATGGAA
CGGTTGTCGCCGTGGTACGTGCTGCTAAAGGTTTGCCTGCCTTCTACCAT
CGGTCTTGTGAAAGAGCCTCAGCTTCTCGACGAAATGTACAGCCGCTCGG
CAATGGAA
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