prot_H-elongata_contig174076.4523.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig174076.4523.1
Unique Nameprot_H-elongata_contig174076.4523.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
[Close]
BLAST of mRNA_H-elongata_contig174076.4523.1 vs. uniprot
Match: D8LBT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT4_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.500e-15
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0 
Query:    1 MGLARPAMAGVDEGAYEKLRVIYNGLDIAGPAIVAAEDMEIANLCKHPFC 50
            M L RPA+ GVD+G+YEKLR +YN LDIAGP I AAEDM++A LCKH FC
Sbjct:  375 MMLKRPAILGVDKGSYEKLRKLYNSLDIAGPNIEAAEDMDMAMLCKHQFC 424
[Close]
BLAST of mRNA_H-elongata_contig174076.4523.1 vs. uniprot
Match: A0A6H5KY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY55_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.940e-14
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 0 
Query:    1 MGLARPAMAGVDEGAYEKLRVIYNGLDIAGPAIVAAEDMEIANLCKHPFC 50
            M L RPA+ G D+G+YEKLR +YN LDIAGP I AAEDM++A LCKH FC
Sbjct:  505 MMLKRPAILGGDKGSYEKLRKLYNVLDIAGPDIEAAEDMDMAMLCKHQFC 554
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174076.4523.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBT4_ECTSI3.500e-1570.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY55_9PHAE7.940e-1468.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174076contigH-elongata_contig174076:457..612 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174076.4523.1mRNA_H-elongata_contig174076.4523.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig174076 457..636 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig174076.4523.1 ID=prot_H-elongata_contig174076.4523.1|Name=mRNA_H-elongata_contig174076.4523.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MGLARPAMAGVDEGAYEKLRVIYNGLDIAGPAIVAAEDMEIANLCKHPFC
K*
back to top