mRNA_H-elongata_contig174076.4523.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174076.4523.1
Unique NamemRNA_H-elongata_contig174076.4523.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig174076.4523.1 vs. uniprot
Match: D8LBT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT4_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.150e-21
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 KHYVHCLVMGLARPAMAGVDEGAYEKLRVIYNGLDIAGPAIVAAEDMEIANLCKHPFC 174
            KHYVHCLVM L RPA+ GVD+G+YEKLR +YN LDIAGP I AAEDM++A LCKH FC
Sbjct:  367 KHYVHCLVMMLKRPAILGVDKGSYEKLRKLYNSLDIAGPNIEAAEDMDMAMLCKHQFC 424
[Close]
BLAST of mRNA_H-elongata_contig174076.4523.1 vs. uniprot
Match: A0A6H5KY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY55_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.610e-20
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 KHYVHCLVMGLARPAMAGVDEGAYEKLRVIYNGLDIAGPAIVAAEDMEIANLCKHPFC 174
            KHYVHCLVM L RPA+ G D+G+YEKLR +YN LDIAGP I AAEDM++A LCKH FC
Sbjct:  497 KHYVHCLVMMLKRPAILGGDKGSYEKLRKLYNVLDIAGPDIEAAEDMDMAMLCKHQFC 554
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174076.4523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBT4_ECTSI1.150e-2174.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY55_9PHAE2.610e-2072.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174076contigH-elongata_contig174076:457..636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_002780.1
Exons1
Model size180
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.6549945-CDS-H-elongata_contig174076:456..6121622930010.6549945-CDS-H-elongata_contig174076:456..612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174076 457..612 -
1691679244.927062-CDS-H-elongata_contig174076:456..6121691679244.927062-CDS-H-elongata_contig174076:456..612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174076 457..612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.6918473-UTR-H-elongata_contig174076:612..6361622930010.6918473-UTR-H-elongata_contig174076:612..636Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174076 613..636 -
1691679244.9351165-UTR-H-elongata_contig174076:612..6361691679244.9351165-UTR-H-elongata_contig174076:612..636Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174076 613..636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174076.4523.1prot_H-elongata_contig174076.4523.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174076 457..612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174076.4523.1

>prot_H-elongata_contig174076.4523.1 ID=prot_H-elongata_contig174076.4523.1|Name=mRNA_H-elongata_contig174076.4523.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MGLARPAMAGVDEGAYEKLRVIYNGLDIAGPAIVAAEDMEIANLCKHPFC
K*
back to top

mRNA from alignment at H-elongata_contig174076:457..636-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174076.4523.1 ID=mRNA_H-elongata_contig174076.4523.1|Name=mRNA_H-elongata_contig174076.4523.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig174076:457..636- (Himanthalia elongata Himel1 dioecious)
AAGCACTACGTGCATTGTCTGGTGATGGGACTCGCTCGACCTGCCATGGC
GGGGGTGGATGAAGGGGCCTACGAGAAGCTCCGCGTGATCTACAACGGCC
TGGACATCGCCGGCCCAGCCATCGTCGCCGCCGAGGACATGGAGATCGCT
AATCTGTGCAAGCACCCGTTCTGCAAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig174076:457..636-

>mRNA_H-elongata_contig174076.4523.1 ID=mRNA_H-elongata_contig174076.4523.1|Name=mRNA_H-elongata_contig174076.4523.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig174076:457..636- (Himanthalia elongata Himel1 dioecious)
ATGGGACTCGCTCGACCTGCCATGGCGGGGGTGGATGAAGGGGCCTACGA
GAAGCTCCGCGTGATCTACAACGGCCTGGACATCGCCGGCCCAGCCATCG
TCGCCGCCGAGGACATGGAGATCGCTAATCTGTGCAAGCACCCGTTCTGC
AAGTGAATGGGACTCGCTCGACCTGCCATGGCGGGGGTGGATGAAGGGGC
CTACGAGAAGCTCCGCGTGATCTACAACGGCCTGGACATCGCCGGCCCAG
CCATCGTCGCCGCCGAGGACATGGAGATCGCTAATCTGTGCAAGCACCCG
TTCTGCAAGTGA
back to top