mRNA_H-elongata_contig174063.4522.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174063.4522.1
Unique NamemRNA_H-elongata_contig174063.4522.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig174063.4522.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.750e-16
Identity = 48/105 (45.71%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:   25 QAFSAHHIQRSDATAIVWGSPGERCRKYHEGGTDVTTASVSAGESVDGTVSRDHALSSTRIRVDAEELTRGRRAAMPFVQQCDLIFPLPDIVDQPTGQNHRQQSE 339
            Q FSAH+ QR D TA+VWG+PG R        T  +TA+V                SS    VDAE LTRGRRA  PF+QQCDL+FPLPD   +  G +H    E
Sbjct:    3 QDFSAHNTQRGDVTAVVWGAPGARPA------TGESTATVRP--------------SSAAGAVDAEALTRGRRADTPFIQQCDLVFPLPDQDGESDGHDHGDTQE 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174063.4522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K807_9PHAE3.750e-1645.71Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174063contigH-elongata_contig174063:510..848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.6006665-UTR-H-elongata_contig174063:509..5301622930010.6006665-UTR-H-elongata_contig174063:509..530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174063 510..530 +
1691679244.9085333-UTR-H-elongata_contig174063:509..5301691679244.9085333-UTR-H-elongata_contig174063:509..530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig174063 510..530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.6135726-CDS-H-elongata_contig174063:530..8481622930010.6135726-CDS-H-elongata_contig174063:530..848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174063 531..848 +
1691679244.9160838-CDS-H-elongata_contig174063:530..8481691679244.9160838-CDS-H-elongata_contig174063:530..848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174063 531..848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174063.4522.1prot_H-elongata_contig174063.4522.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174063 531..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174063.4522.1

>prot_H-elongata_contig174063.4522.1 ID=prot_H-elongata_contig174063.4522.1|Name=mRNA_H-elongata_contig174063.4522.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MQAFSAHHIQRSDATAIVWGSPGERCRKYHEGGTDVTTASVSAGESVDGT
VSRDHALSSTRIRVDAEELTRGRRAAMPFVQQCDLIFPLPDIVDQPTGQN
HRQQSE
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mRNA from alignment at H-elongata_contig174063:510..848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174063.4522.1 ID=mRNA_H-elongata_contig174063.4522.1|Name=mRNA_H-elongata_contig174063.4522.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig174063:510..848+ (Himanthalia elongata Himel1 dioecious)
GTTCTCGTAAAGTTTGGCTGAATGCAAGCGTTCTCCGCCCATCATATTCA
GCGCAGCGATGCAACGGCGATAGTATGGGGGTCTCCTGGCGAACGATGTA
GAAAATATCATGAGGGCGGGACTGATGTTACCACCGCTTCAGTTTCCGCG
GGTGAGTCTGTGGACGGGACTGTCAGCAGAGACCATGCCTTGAGTTCGAC
GAGGATACGAGTGGACGCCGAGGAGCTAACGCGAGGAAGGCGAGCTGCTA
TGCCATTCGTTCAACAATGCGATCTTATCTTCCCTCTCCCTGATATAGTC
GATCAACCAACTGGACAGAACCATAGGCAGCAATCAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig174063:510..848+

>mRNA_H-elongata_contig174063.4522.1 ID=mRNA_H-elongata_contig174063.4522.1|Name=mRNA_H-elongata_contig174063.4522.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig174063:510..848+ (Himanthalia elongata Himel1 dioecious)
ATGCAAGCGTTCTCCGCCCATCATATTCAGCGCAGCGATGCAACGGCGAT
AGTATGGGGGTCTCCTGGCGAACGATGTAGAAAATATCATGAGGGCGGGA
CTGATGTTACCACCGCTTCAGTTTCCGCGGGTGAGTCTGTGGACGGGACT
GTCAGCAGAGACCATGCCTTGAGTTCGACGAGGATACGAGTGGACGCCGA
GGAGCTAACGCGAGGAAGGCGAGCTGCTATGCCATTCGTTCAACAATGCG
ATCTTATCTTCCCTCTCCCTGATATAGTCGATCAACCAACTGGACAGAAC
CATAGGCAGCAATCAGAGATGCAAGCGTTCTCCGCCCATCATATTCAGCG
CAGCGATGCAACGGCGATAGTATGGGGGTCTCCTGGCGAACGATGTAGAA
AATATCATGAGGGCGGGACTGATGTTACCACCGCTTCAGTTTCCGCGGGT
GAGTCTGTGGACGGGACTGTCAGCAGAGACCATGCCTTGAGTTCGACGAG
GATACGAGTGGACGCCGAGGAGCTAACGCGAGGAAGGCGAGCTGCTATGC
CATTCGTTCAACAATGCGATCTTATCTTCCCTCTCCCTGATATAGTCGAT
CAACCAACTGGACAGAACCATAGGCAGCAATCAGAG
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