mRNA_H-elongata_contig173535.4504.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173535.4504.1
Unique NamemRNA_H-elongata_contig173535.4504.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig173535.4504.1 vs. uniprot
Match: D7G038_ECTSI (Integral membrane protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G038_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.600e-35
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 ICTQFATLTLLEEGKTLEDVRCKLSRDLKPTLMNASWFWPMVSVTNTLFVPVINRPAASSFAGLFWNMYLSYQANHNGVEMGEVSEVFAVKE 279
            +  QFA+LTLLEEGKT+ DVR KLSRD  PTL NA  FWP+VSV N+ FVPV++RP  SSF G+FWN+Y+SYQANHNG+E+GE+S V+  ++
Sbjct:   66 LAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSAFVPVLSRPVFSSFVGVFWNVYISYQANHNGMEVGELSVVYPTEQ 157
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BLAST of mRNA_H-elongata_contig173535.4504.1 vs. uniprot
Match: A0A6H5JW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW72_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.600e-35
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 ICTQFATLTLLEEGKTLEDVRCKLSRDLKPTLMNASWFWPMVSVTNTLFVPVINRPAASSFAGLFWNMYLSYQANHNGVEMGEVSEVFAVKE 279
            +  QFA+LTLLEEGKT+ DVR KLSRD  PTL NA  FWP+VSV N+ FVPV++RP  SSF G+FWN+Y+SYQANHNG+E+GE+S V+  ++
Sbjct:  110 LAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSTFVPVLSRPVFSSFVGVFWNVYISYQANHNGMEVGELSVVYPAEQ 201
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BLAST of mRNA_H-elongata_contig173535.4504.1 vs. uniprot
Match: A0A835ZBN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.760e-15
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    4 ICTQFATLTLLEEGKTLEDVRCKLSRDLKPTLMNASWFWPMVSVTNTLFVPVINRPAASSFAGLFWNMYLSYQANHN 234
            I  QFA++TL+E GK  + V  K+ +DL  T    + +WP V + N+ FVPV NRP   SFAGLFWN+YLS++AN +
Sbjct:  106 ISIQFASMTLME-GKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKANES 181
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BLAST of mRNA_H-elongata_contig173535.4504.1 vs. uniprot
Match: UPI001455C596 (protein Mpv17-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455C596)

HSP 1 Score: 60.1 bits (144), Expect = 6.180e-9
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:   10 TQFATLTLLEEGKTLEDVRCKLSRDLKPTLMNASWFWPMVSVTNTLFVPVINRPAASSFAGLFWNMYLSYQAN 228
            T F +   L  G ++++VR KL +D K TL+     WP V + N  FVP+ +R  A +   +FWN YLS+ AN
Sbjct:  103 TTFFSYIGLTSGLSIQNVRDKLKKDFKTTLLTNYKVWPAVQLVNFYFVPLQHRVLAVNLVAVFWNTYLSWMAN 175
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BLAST of mRNA_H-elongata_contig173535.4504.1 vs. uniprot
Match: A0A813WUK2_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813WUK2_9BILA)

HSP 1 Score: 58.9 bits (141), Expect = 2.680e-8
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:    4 ICTQFATLTLLEEGKTLEDVRCKLSRDLKPTLMNASWFWPMVSVTNTLFVPVINRPAASSFAGLFWNMYLSYQANH-NGVE 243
            I   F ++ LL+ G++ E+++ K+   +  T +  + +WP VS  N  ++P+  RP   +FAG+FWN+Y+S  AN  N VE
Sbjct:  120 ISLAFTSIGLLK-GQSFEEIKLKIVHHMPQTFLLGNCYWPFVSFINFRYIPLNYRPFLGTFAGMFWNIYVSTIANKDNDVE 199
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BLAST of mRNA_H-elongata_contig173535.4504.1 vs. uniprot
Match: UPI0014254F9B (protein Mpv17-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014254F9B)

HSP 1 Score: 50.1 bits (118), Expect = 2.710e-5
Identity = 23/62 (37.10%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:   43 GKTLEDVRCKLSRDLKPTLMNASWFWPMVSVTNTLFVPVINRPAASSFAGLFWNMYLSYQAN 228
            G    +V+ KL +D K TL+     WP V + N  FVP+ +R   ++   + WN YLS++AN
Sbjct:  113 GMNTTEVKEKLKKDYKSTLLVNWTVWPFVQICNFYFVPLQHRVITANSVAVVWNTYLSWKAN 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173535.4504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G038_ECTSI1.600e-3564.13Integral membrane protein-like protein n=1 Tax=Ect... [more]
A0A6H5JW72_9PHAE3.600e-3564.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZBN1_9STRA3.760e-1549.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001455C5966.180e-939.73protein Mpv17-like n=1 Tax=Asterias rubens TaxID=7... [more]
A0A813WUK2_9BILA2.680e-835.80Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
UPI0014254F9B2.710e-537.10protein Mpv17-like n=1 Tax=Anneissia japonica TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173535contigH-elongata_contig173535:1026..1304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue5.1e-28
Seed eggNOG ortholog2880.D7G038
Preferred nameSYM1
KEGG koko:K03259,ko:K13348,ko:K13349
KEGG Pathwayko01521,ko03013,ko04066,ko04146,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04146,map04150,map04151,map04211,map04910
KEGG ModuleM00428
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006066,GO:0006067,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016999,GO:0017144,GO:0019866,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901615
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-12_007090.1
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.682965-CDS-H-elongata_contig173535:1025..13041622930008.682965-CDS-H-elongata_contig173535:1025..1304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173535 1026..1304 -
1691679244.0799365-CDS-H-elongata_contig173535:1025..13041691679244.0799365-CDS-H-elongata_contig173535:1025..1304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173535 1026..1304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173535.4504.1prot_H-elongata_contig173535.4504.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173535 1026..1304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173535.4504.1

>prot_H-elongata_contig173535.4504.1 ID=prot_H-elongata_contig173535.4504.1|Name=mRNA_H-elongata_contig173535.4504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
QICTQFATLTLLEEGKTLEDVRCKLSRDLKPTLMNASWFWPMVSVTNTLF
VPVINRPAASSFAGLFWNMYLSYQANHNGVEMGEVSEVFAVKE
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mRNA from alignment at H-elongata_contig173535:1026..1304-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173535.4504.1 ID=mRNA_H-elongata_contig173535.4504.1|Name=mRNA_H-elongata_contig173535.4504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig173535:1026..1304- (Himanthalia elongata Himel1 dioecious)
CAGATCTGCACCCAGTTCGCGACGCTGACGTTGCTGGAGGAGGGCAAGAC
CTTGGAAGACGTGCGCTGTAAGCTGTCCCGAGACCTGAAGCCCACGCTCA
TGAACGCCTCCTGGTTCTGGCCCATGGTGTCCGTAACGAACACCCTTTTC
GTGCCCGTGATCAACCGTCCGGCTGCGAGCAGCTTCGCGGGACTCTTCTG
GAATATGTACCTGTCGTACCAGGCTAACCACAACGGCGTGGAGATGGGGG
AAGTATCCGAGGTTTTCGCGGTCAAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig173535:1026..1304-

>mRNA_H-elongata_contig173535.4504.1 ID=mRNA_H-elongata_contig173535.4504.1|Name=mRNA_H-elongata_contig173535.4504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig173535:1026..1304- (Himanthalia elongata Himel1 dioecious)
CAGATCTGCACCCAGTTCGCGACGCTGACGTTGCTGGAGGAGGGCAAGAC
CTTGGAAGACGTGCGCTGTAAGCTGTCCCGAGACCTGAAGCCCACGCTCA
TGAACGCCTCCTGGTTCTGGCCCATGGTGTCCGTAACGAACACCCTTTTC
GTGCCCGTGATCAACCGTCCGGCTGCGAGCAGCTTCGCGGGACTCTTCTG
GAATATGTACCTGTCGTACCAGGCTAACCACAACGGCGTGGAGATGGGGG
AAGTATCCGAGGTTTTCGCGGTCAAGGAGCAGATCTGCACCCAGTTCGCG
ACGCTGACGTTGCTGGAGGAGGGCAAGACCTTGGAAGACGTGCGCTGTAA
GCTGTCCCGAGACCTGAAGCCCACGCTCATGAACGCCTCCTGGTTCTGGC
CCATGGTGTCCGTAACGAACACCCTTTTCGTGCCCGTGATCAACCGTCCG
GCTGCGAGCAGCTTCGCGGGACTCTTCTGGAATATGTACCTGTCGTACCA
GGCTAACCACAACGGCGTGGAGATGGGGGAAGTATCCGAGGTTTTCGCGG
TCAAGGAG
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