mRNA_H-elongata_contig17351.4503.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17351.4503.1
Unique NamemRNA_H-elongata_contig17351.4503.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17351.4503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17351contigH-elongata_contig17351:336..1383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-22_001620.1
Exons4
Model size528
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17351.4503.1prot_H-elongata_contig17351.4503.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17351 336..1383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.6207907-CDS-H-elongata_contig17351:335..5331622930008.6207907-CDS-H-elongata_contig17351:335..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17351 336..533 +
1691679244.035481-CDS-H-elongata_contig17351:335..5331691679244.035481-CDS-H-elongata_contig17351:335..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17351 336..533 +
1622930008.6309302-CDS-H-elongata_contig17351:643..7031622930008.6309302-CDS-H-elongata_contig17351:643..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17351 644..703 +
1691679244.0460167-CDS-H-elongata_contig17351:643..7031691679244.0460167-CDS-H-elongata_contig17351:643..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17351 644..703 +
1622930008.6404834-CDS-H-elongata_contig17351:888..10081622930008.6404834-CDS-H-elongata_contig17351:888..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17351 889..1008 +
1691679244.0589254-CDS-H-elongata_contig17351:888..10081691679244.0589254-CDS-H-elongata_contig17351:888..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17351 889..1008 +
1622930008.6496706-CDS-H-elongata_contig17351:1233..13831622930008.6496706-CDS-H-elongata_contig17351:1233..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17351 1234..1383 +
1691679244.0706048-CDS-H-elongata_contig17351:1233..13831691679244.0706048-CDS-H-elongata_contig17351:1233..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17351 1234..1383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17351.4503.1

>prot_H-elongata_contig17351.4503.1 ID=prot_H-elongata_contig17351.4503.1|Name=mRNA_H-elongata_contig17351.4503.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
MIPATVSCWDSEAFVEAYRGVAGMTIQRLSSALFSEELLAVEAAMTSAAE
RERMLKERARASFESQLSLQAEKDQLESFKAALGAEVGEAQIALLEAKKA
DELQRDLIYDADRVQSNLRQRILSTQVATCQLCETVMQHLHTIQTAVHRR
VGFIPRSVERAVNDLVGVCTTTGLSE
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mRNA from alignment at H-elongata_contig17351:336..1383+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17351.4503.1 ID=mRNA_H-elongata_contig17351.4503.1|Name=mRNA_H-elongata_contig17351.4503.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-elongata_contig17351:336..1383+ (Himanthalia elongata Himel1 dioecious)
ATGATCCCTGCGACAGTTAGTTGCTGGGATTCCGAAGCTTTCGTCGAGGC
ATATCGAGGCGTGGCAGGAATGACAATACAGAGACTGTCATCGGCGTTGT
TTAGTGAGGAATTGCTAGCGGTGGAGGCCGCAATGACATCGGCGGCGGAG
CGGGAGAGGATGCTGAAAGAACGGGCGAGAGCGTCGTTCGAATCTCAAGT
TAAGCGGGCACATAGGTCTGTATCGATGGCCAATAAGTAAGTATATGTAT
ACATGCGGCAAATGTGCCTCGAATTTCGAACCGACACATGACGTTTGCTA
CGCGGCAGCTATCCCTGCAGGCGGAGAAGGATCAACTGGAAAGCTTCAAG
GCTGCATTAGGGGCGGAGGTGGGATTTACGAGCCCCTTCTGGGTATGGAA
GTTCTAGCATGAAGTTCGAGGTGCAGGCGGTTGGCATGTTGGAAGAGATC
GACGAACATTTTGTGCCAGCTATGAGTCACCGTTTATCGGATCAGTGCGA
AATCGTCGCGGACTATATATGGATGAGCTTTGGCCCACATGGCACGACAG
CAGGTCGGCGAAGCCCAAATCGCTCTACTGGAGGCCAAGAAGGCGGACGA
GCTCCAGCGAGACCTTATCTACGATGCGGACCGTGTACAATCCAATCTCA
GGCAACGCATTCTGTCCACCCAGGTCGGTAGAGATAATCTTCGCTTCCAA
GAACATGCTGGAAGACGCATGCATACGTCGGAGGAACATTCTTTATTTTG
CAAAAATACCGGGGCGAGATTCAATTCAGAGGGGAAACGGTTATGATAAA
AATATATACGAAAAAGTCATGTCGTATAATAGTTCTCCTTGATGATACGA
ACACAAAGAGTTTATTAATCGTAGTTGACGTCTCTTGTTTGATCCTAGGT
GGCGACATGTCAACTGTGTGAAACGGTGATGCAGCATCTTCATACAATTC
AGACAGCTGTGCACAGGCGCGTAGGCTTCATACCACGCTCGGTTGAGCGG
GCTGTCAACGATCTGGTTGGCGTGTGCACCACCACGGGGCTCTCCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig17351:336..1383+

>mRNA_H-elongata_contig17351.4503.1 ID=mRNA_H-elongata_contig17351.4503.1|Name=mRNA_H-elongata_contig17351.4503.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig17351:336..1383+ (Himanthalia elongata Himel1 dioecious)
ATGATCCCTGCGACAGTTAGTTGCTGGGATTCCGAAGCTTTCGTCGAGGC
ATATCGAGGCGTGGCAGGAATGACAATACAGAGACTGTCATCGGCGTTGT
TTAGTGAGGAATTGCTAGCGGTGGAGGCCGCAATGACATCGGCGGCGGAG
CGGGAGAGGATGCTGAAAGAACGGGCGAGAGCGTCGTTCGAATCTCAAAT
GATCCCTGCGACAGTTAGTTGCTGGGATTCCGAAGCTTTCGTCGAGGCAT
ATCGAGGCGTGGCAGGAATGACAATACAGAGACTGTCATCGGCGTTGTTT
AGTGAGGAATTGCTAGCGGTGGAGGCCGCAATGACATCGGCGGCGGAGCG
GGAGAGGATGCTGAAAGAACGGGCGAGAGCGTCGTTCGAATCTCAACTAT
CCCTGCAGGCGGAGAAGGATCAACTGGAAAGCTTCAAGGCTGCATTAGGG
GCGGAGCTATCCCTGCAGGCGGAGAAGGATCAACTGGAAAGCTTCAAGGC
TGCATTAGGGGCGGAGGTCGGCGAAGCCCAAATCGCTCTACTGGAGGCCA
AGAAGGCGGACGAGCTCCAGCGAGACCTTATCTACGATGCGGACCGTGTA
CAATCCAATCTCAGGCAACGCATTCTGTCCACCCAGGTCGGCGAAGCCCA
AATCGCTCTACTGGAGGCCAAGAAGGCGGACGAGCTCCAGCGAGACCTTA
TCTACGATGCGGACCGTGTACAATCCAATCTCAGGCAACGCATTCTGTCC
ACCCAGGTGGCGACATGTCAACTGTGTGAAACGGTGATGCAGCATCTTCA
TACAATTCAGACAGCTGTGCACAGGCGCGTAGGCTTCATACCACGCTCGG
TTGAGCGGGCTGTCAACGATCTGGTTGGCGTGTGCACCACCACGGGGCTC
TCCGAAGTGGCGACATGTCAACTGTGTGAAACGGTGATGCAGCATCTTCA
TACAATTCAGACAGCTGTGCACAGGCGCGTAGGCTTCATACCACGCTCGG
TTGAGCGGGCTGTCAACGATCTGGTTGGCGTGTGCACCACCACGGGGCTC
TCCGAA
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