prot_H-elongata_contig173504.4502.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig173504.4502.1
Unique Nameprot_H-elongata_contig173504.4502.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length204
Homology
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 158 bits (400), Expect = 3.380e-41
Identity = 87/197 (44.16%), Postives = 123/197 (62.44%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            GV++ V RP+ + ++G++ VFK K G DG++EKYK R VAQGF QV+GI Y E+ +P     SIR++L++ A   WE  Q+DV  A+L  ++EEEIY+++P G++ S   V  LKK +YGL  A   W KK   EL+  GF R QAD CVF + +  +   +I VYVDD +V S +     +   DL S F + DLG
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMD-RHPPIIAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLG 1220          
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 146 bits (369), Expect = 1.680e-40
Identity = 75/197 (38.07%), Postives = 119/197 (60.41%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            G W++ + PK +  +G + VF++K  K+G++ KYK R VAQG+ Q+ G+ + E+ +P     SIR +L++     WE  Q+DV  AYL  D++EEIY+  PEG+ D    V  L K +YGL  +G  W++K   +L   G+ + +ADPCV+ +   G+V + I V+VDDLL+ + + +   +  RDL   F + DLG
Sbjct:    2 GTWELQDLPKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQI-ITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLG 197          
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D)

HSP 1 Score: 144 bits (364), Expect = 1.560e-38
Identity = 78/206 (37.86%), Postives = 127/206 (61.65%), Query Frame = 0
Query:    1 MDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRK--QVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            MD   + GVW +V+ P+G   +G + ++KRKIG DGK+E YK R VA+G+ Q +G+ YEE+ SP     SIR++L++ A   +E  Q+DV  A+L  ++EE++Y+E P+G+  S +  +V  LK+ +YGL  A   W+ +F   +++ GF ++  +PCV+++   G  V  +V+YVDD+L+        +     L S F +KDLG
Sbjct:  112 MDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYEICQMDVKTAFLNGNIEEDLYMEQPKGFISSGEDHKVCKLKRSIYGLKQASRSWNIRFNEAVKSFGFIQNMDEPCVYKKD-SGSAVTFLVLYVDDILIIGNDTGMISSVKLWLSSNFSMKDLG 316          
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 150 bits (378), Expect = 3.000e-38
Identity = 75/197 (38.07%), Postives = 119/197 (60.41%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            G W++ E  + + ++G+R VF +K  + GK+ +YK R VAQGF Q+ G+ Y ++ SP     ++R  +++ A   WE RQ+D+  AYL  ++EEEI++E PEG+ D   +V  LK  +YGL  AG +W+KK   +L   GF R+ ADPCV+     GK+ + + V+VDD+++   ++      V  L   F +KDLG
Sbjct:  885 GTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITI-LTVWVDDIILCGDSESRIDTTVSALKKIFEVKDLG 1080          
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 146 bits (369), Expect = 3.850e-38
Identity = 86/192 (44.79%), Postives = 118/192 (61.46%), Query Frame = 0
Query:   13 VERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            VE PK + V+G++ VF+ K G +GKIEKYK R VAQGF QVKGI Y E+ +P     SIR +LS+ A L  E  Q+DV  A+L  D++EEIY++ P G+      V  LKK +Y L  A   W KK   E EA GF RS+AD  VF +  +G +++V V YV+D+L+ S + +   Q   +L  C+ + DLG
Sbjct:   29 VECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEWYKKVREEFEALGFTRSEADHSVFYKNENGALMIVAV-YVNDMLLFSNSMKGIDQLKAELKDCYEMTDLG 219          
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 141 bits (355), Expect = 4.360e-38
Identity = 72/206 (34.95%), Postives = 122/206 (59.22%), Query Frame = 0
Query:    1 MDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYR--DSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            M+       W++V++P+ K  +G R +F  K   DG IE+YK R VA+G+ Q  GI Y+E+ +P     ++R+VL++ A  GW+  QLDV  A+L  ++EEE+Y+E+P+G++  + R +V LLKK +YGL  +   W  +F  E+ +  + +SQ D  +F +        ++ VYVDD+++A   + ++      L + F +KDLG
Sbjct:   14 MNALERNSTWEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAWFGRFTKEMVSLEYRQSQGDHTLFIKHSSTGKFALLFVYVDDMIIAGDDETEKLALKEKLAAQFEMKDLG 219          
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 149 bits (376), Expect = 5.590e-38
Identity = 76/197 (38.58%), Postives = 118/197 (59.90%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            G W++ + PK +  +G + VF+RK  K+G++ KYK R VAQG+ Q+ G+ + E+ +P     SIR +L++     WE  Q+DV  AYL  D++EEIY+  PEG+ D   ++  L+K +YGL  +G  W++K   EL   G+ R +ADPCV+        V +I V+VDDLL+ + + +   +  RDL   F + DLG
Sbjct:  937 GTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLG 1133          
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A284R853_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284R853_ARMOS)

HSP 1 Score: 145 bits (367), Expect = 6.950e-38
Identity = 76/197 (38.58%), Postives = 117/197 (59.39%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            G +   + P G+  +G + VF +K  +DG I +YK R VAQG+ Q+ G+ Y E+ +P     S+   L + A    E  Q+DV  AYL  ++EEEIY+  PEGY D   +V  L+K +YGL  +G  W+ +F  +L + GF + +AD CV++R+  G++ + I V+VDDLL+ S T  D  +   +L + F +KDLG
Sbjct:    2 GTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYNETFAPVVRLESVHAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGCEWNWEFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLG 197          
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 149 bits (375), Expect = 7.590e-38
Identity = 77/197 (39.09%), Postives = 119/197 (60.41%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            G +   + P G+  +G + VF +K  +DG I +YK R VAQG+ Q+ G+ Y E+ +P     S+R  L + A    E  Q+DV  AYL  ++EEEIY+  PEGY D   +V  L+K +YGL  +G  W+++F  +L + GF + +AD CV++R+  G++ + I V+VDDLL+ S T  D  +   +L + F +KDLG
Sbjct:  909 GTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLG 1104          
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY)

HSP 1 Score: 147 bits (372), Expect = 9.660e-38
Identity = 80/205 (39.02%), Postives = 125/205 (60.98%), Query Frame = 0
Query:    2 DGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGY--RDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 204
            D     GVW++V+R +G  V+G + +FKRK    GK+EK+K R VA+G+ Q  G+ +EE+ SP     SIR +LS++A   +E  Q+DV  A+L  D+EE++Y+E PEG+  +    +V  L+K +YGL  A   W+ KF   +   GF ++ ++PCV+ R +H KVV+ + +YVDD+L+A        +  + L   F +KDLG
Sbjct:  355 DSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVI-LTLYVDDILLAGNDVDMLDEVKQWLFKTFEMKDLG 558          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK3.380e-4144.16Integrase catalytic domain-containing protein (Fra... [more]
A0A401GXA0_9APHY1.680e-4038.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C988E4D1.560e-3837.86hypothetical protein n=3 Tax=Bacteria TaxID=2 RepI... [more]
A0A0C3AKI0_9AGAM3.000e-3838.07Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A2R6NNP3_9APHY3.850e-3844.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151RGT1_CAJCA4.360e-3834.95Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GYH9_9APHY5.590e-3838.58Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A284R853_ARMOS6.950e-3838.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284QR88_ARMOS7.590e-3839.09Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A2N9IT45_FAGSY9.660e-3839.02Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..204
e-value: 1.9E-43
score: 148.9
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..180
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..180
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 9..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173504contigH-elongata_contig173504:726..1337 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173504.4502.1mRNA_H-elongata_contig173504.4502.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig173504 705..1337 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig173504.4502.1 ID=prot_H-elongata_contig173504.4502.1|Name=mRNA_H-elongata_contig173504.4502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
MDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGF
KQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVE
EEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPR
SQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPI
KDLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like