mRNA_H-elongata_contig173504.4502.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 159 bits (403), Expect = 1.710e-41 Identity = 90/210 (42.86%), Postives = 128/210 (60.95%), Query Frame = 1
Query: 4 KAIAREMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
KA E++ GV++ V RP+ + ++G++ VFK K G DG++EKYK R VAQGF QV+GI Y E+ +P SIR++L++ A WE Q+DV A+L ++EEEIY+++P G++ S V LKK +YGL A W KK EL+ GF R QAD CVF + + + +I VYVDD +V S + + DL S F + DLG
Sbjct: 1012 KACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMD-RHPPIIAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLG 1220
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 146 bits (368), Expect = 3.000e-40 Identity = 75/197 (38.07%), Postives = 119/197 (60.41%), Query Frame = 1
Query: 43 GVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
G W++ + PK + +G + VF++K K+G++ KYK R VAQG+ Q+ G+ + E+ +P SIR +L++ WE Q+DV AYL D++EEIY+ PEG+ D V L K +YGL +G W++K +L G+ + +ADPCV+ + G+V + I V+VDDLL+ + + + + RDL F + DLG
Sbjct: 2 GTWELQDLPKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQI-ITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLG 197
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 154 bits (390), Expect = 9.440e-40 Identity = 81/211 (38.39%), Postives = 124/211 (58.77%), Query Frame = 1
Query: 1 EKAIAREMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
EKA+ E D G W++ + PK + +G + VF+RK K+G++ KYK R VAQG+ Q+ G+ + E+ +P SIR +L++ WE Q+DV AYL D++EEIY+ PEG+ D ++ L+K +YGL +G W++K EL G+ R +ADPCV+ V +I V+VDDLL+ + + + + RDL F + DLG
Sbjct: 923 EKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLG 1133
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D) HSP 1 Score: 147 bits (372), Expect = 1.290e-39 Identity = 80/213 (37.56%), Postives = 132/213 (61.97%), Query Frame = 1
Query: 1 EKAIAREMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRK--QVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
++A+ EMD + GVW +V+ P+G +G + ++KRKIG DGK+E YK R VA+G+ Q +G+ YEE+ SP SIR++L++ A +E Q+DV A+L ++EE++Y+E P+G+ S + +V LK+ +YGL A W+ +F +++ GF ++ +PCV+++ G V +V+YVDD+L+ + L S F +KDLG
Sbjct: 105 QEAMKSEMDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYEICQMDVKTAFLNGNIEEDLYMEQPKGFISSGEDHKVCKLKRSIYGLKQASRSWNIRFNEAVKSFGFIQNMDEPCVYKKD-SGSAVTFLVLYVDDILIIGNDTGMISSVKLWLSSNFSMKDLG 316
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA) HSP 1 Score: 144 bits (363), Expect = 3.490e-39 Identity = 74/212 (34.91%), Postives = 126/212 (59.43%), Query Frame = 1
Query: 4 KAIAREMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYR--DSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
+A+ EM+ W++V++P+ K +G R +F K DG IE+YK R VA+G+ Q GI Y+E+ +P ++R+VL++ A GW+ QLDV A+L ++EEE+Y+E+P+G++ + R +V LLKK +YGL + W +F E+ + + +SQ D +F + ++ VYVDD+++A + ++ L + F +KDLG
Sbjct: 8 QAMKEEMNALERNSTWEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAWFGRFTKEMVSLEYRQSQGDHTLFIKHSSTGKFALLFVYVDDMIIAGDDETEKLALKEKLAAQFEMKDLG 219
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 149 bits (376), Expect = 4.740e-39 Identity = 90/209 (43.06%), Postives = 125/209 (59.81%), Query Frame = 1
Query: 7 AIAREMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
A A+EM ++ VE PK + V+G++ VF+ K G +GKIEKYK R VAQGF QVKGI Y E+ +P SIR +LS+ A L E Q+DV A+L D++EEIY++ P G+ V LKK +Y L A W KK E EA GF RS+AD VF + +G +++V V YV+D+L+ S + + Q +L C+ + DLG
Sbjct: 12 ACAQEMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEWYKKVREEFEALGFTRSEADHSVFYKNENGALMIVAV-YVNDMLLFSNSMKGIDQLKAELKDCYEMTDLG 219
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY) HSP 1 Score: 152 bits (383), Expect = 7.840e-39 Identity = 80/211 (37.91%), Postives = 123/211 (58.29%), Query Frame = 1
Query: 1 EKAIAREMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
EKA+ E D G W++ + PK + +G + VF+RK K+ ++ KYK R VAQG+ Q+ G+ + E+ +P SIR +L++ WE Q+DV AYL D++EEIY+ PEG+ D ++ L+K +YGL +G W++K EL G+ R +ADPCV+ V +I V+VDDLL+ + + + + RDL F + DLG
Sbjct: 728 EKAVKAEYDQLQGMGTWELQDLPKYRNAVGCKWVFQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLG 938
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 151 bits (382), Expect = 1.110e-38 Identity = 81/210 (38.57%), Postives = 124/210 (59.05%), Query Frame = 1
Query: 4 KAIAREMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGYRDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
KA+ EM G + + P G+ +G + VF +K +DG I +YK R VAQG+ Q+ G+ Y E+ +P S+R L + A E Q+DV AYL ++EEEIY+ PEGY D +V L+K +YGL +G W+++F +L + GF + +AD CV++R+ G++ + I V+VDDLL+ S T D + +L + F +KDLG
Sbjct: 896 KAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLG 1104
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY) HSP 1 Score: 150 bits (378), Expect = 1.800e-38 Identity = 82/211 (38.86%), Postives = 128/211 (60.66%), Query Frame = 1
Query: 7 AIAREMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGY--RDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
A+ E D GVW++V+R +G V+G + +FKRK GK+EK+K R VA+G+ Q G+ +EE+ SP SIR +LS++A +E Q+DV A+L D+EE++Y+E PEG+ + +V L+K +YGL A W+ KF + GF ++ ++PCV+ R +H KVV+ + +YVDD+L+A + + L F +KDLG
Sbjct: 349 AMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVI-LTLYVDDILLAGNDVDMLDEVKQWLFKTFEMKDLG 558
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Match: A0A2N9I256_FAGSY (Uncharacterized protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I256_FAGSY) HSP 1 Score: 150 bits (378), Expect = 3.660e-38 Identity = 82/211 (38.86%), Postives = 128/211 (60.66%), Query Frame = 1
Query: 7 AIAREMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFKQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYIELPEGY--RDSRKQVGLLKKVMYGLVHAGLLWSKKFGTELEAKGFPRSQADPCVFRRVLHGKVVVVIVVYVDDLLVASATKRDEAQAVRDLCSCFPIKDLG 633
A+ E D GVW++V+R +G V+G + +FKRK GK+EK+K R VA+G+ Q G+ +EE+ SP SIR +LS++A +E Q+DV A+L D+EE++Y+E PEG+ + +V L+K +YGL A W+ KF + GF ++ ++PCV+ R +H KVV+ + +YVDD+L+A + + L F +KDLG
Sbjct: 525 AMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVI-LTLYVDDILLAGNDVDMLDEVKQWLFKTFEMKDLG 734 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173504.4502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig173504.4502.1 >prot_H-elongata_contig173504.4502.1 ID=prot_H-elongata_contig173504.4502.1|Name=mRNA_H-elongata_contig173504.4502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp MDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIGKDGKIEKYKCRFVAQGFback to top mRNA from alignment at H-elongata_contig173504:705..1337+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig173504.4502.1 ID=mRNA_H-elongata_contig173504.4502.1|Name=mRNA_H-elongata_contig173504.4502.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=633bp|location=Sequence derived from alignment at H-elongata_contig173504:705..1337+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig173504:705..1337+ >mRNA_H-elongata_contig173504.4502.1 ID=mRNA_H-elongata_contig173504.4502.1|Name=mRNA_H-elongata_contig173504.4502.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig173504:705..1337+ (Himanthalia elongata Himel1 dioecious)back to top |