mRNA_H-elongata_contig173368.4497.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173368.4497.1
Unique NamemRNA_H-elongata_contig173368.4497.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: D8LM67_ECTSI (Brix domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM67_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.560e-25
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 QDVKLDVGRDESLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            +DVKLDVGRDESLSSAVNEIAEIKSC SCVFLECRK+TDLYLWAGKT +GPSAK
Sbjct:  109 KDVKLDVGRDESLSSAVNEIAEIKSCNSCVFLECRKKTDLYLWAGKTPTGPSAK 162
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: A0A6H5KAJ4_9PHAE (Brix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.440e-24
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 QDVKLDVGRDESLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            +DVKLDVGRDESLSSAVNEIAEIKSC SCVFLECRK++DLYLWAGKT +GPSAK
Sbjct:  189 KDVKLDVGRDESLSSAVNEIAEIKSCNSCVFLECRKKSDLYLWAGKTPTGPSAK 242
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: A0A835YV20_9STRA (Brix domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV20_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.080e-16
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 QDVKLDVGRDESLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            +DVKLDVGR ESL+ AVN I+E+KSC + VF ECRK+ D+Y+W GKT  GPS K
Sbjct:  131 KDVKLDVGRGESLAQAVNAISEMKSCNNTVFFECRKKKDIYMWVGKTPHGPSGK 184
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: A0A4D9CW00_9STRA (Brix domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW00_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.630e-11
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 QDVKLDVGRDESLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            +DVKLD   D  +   +NEIAE+KSC +C+FLE RKR DLYLW  KT  GPS K
Sbjct:  215 KDVKLDCKGDLQV---INEIAEVKSCNNCLFLEARKRQDLYLWLSKTPLGPSIK 265
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: A0A7J7C2G8_TRIWF (Brix domain-containing protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C2G8_TRIWF)

HSP 1 Score: 64.7 bits (156), Expect = 6.810e-11
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   34 SLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            S  + +NE+ E+KSC SC+F ECRKR+DLYLW  K+ SGPS K
Sbjct:   89 SKGATLNELVELKSCSSCLFFECRKRSDLYLWMAKSPSGPSVK 131
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: A0A4Y7JQ01_PAPSO (Brix domain-containing protein n=4 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JQ01_PAPSO)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-10
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   31 ESLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            ES  S +NE+ E+K+C SC+F ECRK  DLYLWA K+ +GPS K
Sbjct:   92 ESKGSTLNELVELKNCSSCLFFECRKGKDLYLWAAKSPNGPSVK 135
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: A0A0L0FLT0_9EUKA (Ribosome biogenesis protein BRX1 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FLT0_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-10
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 DVKLDVGRDESLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            DVKLD  R + LS  VNE+ E+K+C +CVFLE +K+ DLY+W  KT +GPSAK
Sbjct:   94 DVKLD--RKDQLS-IVNEVCELKNCNNCVFLEMKKKQDLYMWLSKTPNGPSAK 143
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: A0A5J5A384_9ASTE (Brix domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5A384_9ASTE)

HSP 1 Score: 62.4 bits (150), Expect = 1.450e-10
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   31 ESLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            ES  + +NE+ E+KSC SC+F ECRK+ DLYLW  K  +GPS K
Sbjct:   89 ESKGATLNELVELKSCSSCLFFECRKQKDLYLWMAKCPNGPSVK 132
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: A0A5C7ID93_9ROSI (Brix domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7ID93_9ROSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.710e-10
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   34 SLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            S  + +NE+ E+KSC SC+F ECRK  DLYLW  K++SGPS K
Sbjct:   92 SKGATLNELVELKSCSSCLFFECRKHKDLYLWMVKSASGPSVK 134
[Close]
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Match: A0A834Y9X9_9MAGN (Brix domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834Y9X9_9MAGN)

HSP 1 Score: 62.0 bits (149), Expect = 2.430e-10
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   31 ESLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSGPSAK 162
            ES  + +NE+ E+K+C SC+F ECRK+ DLYLW  K+ +GPS K
Sbjct:   89 ESKGATLNELVELKNCSSCLFFECRKQKDLYLWMAKSPNGPSVK 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173368.4497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM67_ECTSI1.560e-2590.74Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KAJ4_9PHAE2.440e-2488.89Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YV20_9STRA3.080e-1664.81Brix domain-containing protein n=1 Tax=Tribonema m... [more]
A0A4D9CW00_9STRA4.630e-1159.26Brix domain-containing protein n=4 Tax=Monodopsida... [more]
A0A7J7C2G8_TRIWF6.810e-1160.47Brix domain-containing protein n=1 Tax=Tripterygiu... [more]
A0A4Y7JQ01_PAPSO1.330e-1059.09Brix domain-containing protein n=4 Tax=Papaver som... [more]
A0A0L0FLT0_9EUKA1.330e-1058.49Ribosome biogenesis protein BRX1 n=1 Tax=Sphaerofo... [more]
A0A5J5A384_9ASTE1.450e-1056.82Brix domain-containing protein n=1 Tax=Nyssa sinen... [more]
A0A5C7ID93_9ROSI1.710e-1058.14Brix domain-containing protein n=1 Tax=Acer yangbi... [more]
A0A834Y9X9_9MAGN2.430e-1054.55Brix domain-containing protein n=1 Tax=Tetracentro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173368contigH-elongata_contig173368:1033..1197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue3.9e-20
Seed eggNOG ortholog2880.D8LM67
Preferred nameBRX1
KEGG koko:K14820
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG5154@1,KOG2971@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.2138557-CDS-H-elongata_contig173368:1032..11971622930008.2138557-CDS-H-elongata_contig173368:1032..1197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173368 1033..1197 -
1691679243.785795-CDS-H-elongata_contig173368:1032..11971691679243.785795-CDS-H-elongata_contig173368:1032..1197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173368 1033..1197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173368.4497.1prot_H-elongata_contig173368.4497.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173368 1033..1197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173368.4497.1

>prot_H-elongata_contig173368.4497.1 ID=prot_H-elongata_contig173368.4497.1|Name=mRNA_H-elongata_contig173368.4497.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
QDVKLDVGRDESLSSAVNEIAEIKSCGSCVFLECRKRTDLYLWAGKTSSG
PSAK*
back to top

mRNA from alignment at H-elongata_contig173368:1033..1197-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173368.4497.1 ID=mRNA_H-elongata_contig173368.4497.1|Name=mRNA_H-elongata_contig173368.4497.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig173368:1033..1197- (Himanthalia elongata Himel1 dioecious)
CAGGATGTGAAGCTGGACGTGGGCCGTGACGAGAGCCTGTCGAGTGCGGT
GAACGAGATCGCCGAGATCAAGAGTTGTGGCTCTTGCGTGTTCCTCGAGT
GCAGGAAGAGGACGGACCTCTACTTGTGGGCGGGCAAGACTTCCAGCGGC
CCCTCTGCCAAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig173368:1033..1197-

>mRNA_H-elongata_contig173368.4497.1 ID=mRNA_H-elongata_contig173368.4497.1|Name=mRNA_H-elongata_contig173368.4497.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig173368:1033..1197- (Himanthalia elongata Himel1 dioecious)
CAGGATGTGAAGCTGGACGTGGGCCGTGACGAGAGCCTGTCGAGTGCGGT
GAACGAGATCGCCGAGATCAAGAGTTGTGGCTCTTGCGTGTTCCTCGAGT
GCAGGAAGAGGACGGACCTCTACTTGTGGGCGGGCAAGACTTCCAGCGGC
CCCTCTGCCAAGTGACAGGATGTGAAGCTGGACGTGGGCCGTGACGAGAG
CCTGTCGAGTGCGGTGAACGAGATCGCCGAGATCAAGAGTTGTGGCTCTT
GCGTGTTCCTCGAGTGCAGGAAGAGGACGGACCTCTACTTGTGGGCGGGC
AAGACTTCCAGCGGCCCCTCTGCCAAGTGA
back to top