mRNA_H-elongata_contig17334.4496.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17334.4496.1
Unique NamemRNA_H-elongata_contig17334.4496.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: D7FXW9_ECTSI (Intraflagellar transport protein 122 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW9_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.620e-36
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    4 QVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPATEEGDILALGCWDQTLSFYLSSGEKFQQRR 258
            +VHAKILS  WS DGLHLALGF DG+VGIRD +G+EKVTI+R  APVWCLAWCPA E+G++LALGCWDQTLSFYL SGE+  + R
Sbjct:  138 KVHAKILSAGWSPDGLHLALGFFDGNVGIRDVNGVEKVTITR-GAPVWCLAWCPAQEDGEVLALGCWDQTLSFYLLSGEQHTKDR 221
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: A0A0J8B030_BETVV (Intraflagellar transport protein 122 homolog (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B030_BETVV)

HSP 1 Score: 96.3 bits (238), Expect = 8.880e-24
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 WQVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPATEEGD-ILALGCWDQTLSFYLSSGEKFQQRR 258
            ++V +KI+S  W+ DG +LALG  DGHV IRD  G EK  I R + P+WCL W P+  EG   LA+GCWDQTLSFY  +G++  + R
Sbjct:   24 YKVSSKIVSASWTPDGNYLALGQYDGHVSIRDRQGNEKSVIERHE-PIWCLQWSPSNSEGQSTLAVGCWDQTLSFYQINGQQLWKDR 109
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: A0A7S3VV23_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VV23_9SPIT)

HSP 1 Score: 95.1 bits (235), Expect = 1.420e-23
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    4 QVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPA---TEEGDILALGCWDQTLSFYLSSGEKF 246
            +V AKIL++ W++DGLHLA+G   GH+ IRD  G+EK  + R  AP+W L W P    T+  D+L +GCWDQTLSFY  SG ++
Sbjct:    8 KVSAKILAMSWTNDGLHLAIGLFSGHISIRDKFGMEKADVIR-SAPIWTLTWNPVPTKTDPTDVLIVGCWDQTLSFYKVSGVEY 90
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: A0A835ZL39_9STRA (Intraflagellar transport protein 122 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL39_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.460e-23
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    4 QVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPA------------TEEGDILALGCWDQTLSFYLSSGE 240
            +VHAKI S  WS+DG HLALGFIDG + +RD +G+EKVTISR   P+W L W P              ++ ++LA+GCWDQTLSFY  SGE
Sbjct:  138 KVHAKITSASWSNDGQHLALGFIDGKIIVRDKEGVEKVTISR-GGPIWSLNWSPLPTDSYSVAASYNNDDPELLAVGCWDQTLSFYDMSGE 227
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: A0A6U4JUW1_9STRA (Intraflagellar transport protein 122 homolog (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JUW1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.480e-23
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    4 QVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPATEEGDILALGCWDQTLSFYLSSG 237
            +V +KILS DW+  GLH ALG  +G V IRD DG E++TI R  APVW LAW PA ++ +ILA+GCW+QTLSFY  +G
Sbjct:  137 RVESKILSADWTPSGLHFALGLFNGKVQIRDKDGAERLTIER-SAPVWTLAWSPARDDREILAVGCWNQTLSFYKLNG 213
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: A0A8J2WGR4_9STRA (Intraflagellar transport protein 122 homolog n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WGR4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 8.300e-23
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    4 QVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPATEE-GDILALGCWDQTLSFYLSSGEKFQQRR 258
            +V AKILS  WS DG +LALG  DG + IRD  G E   I ++ APVWCLAW PA E+ GD+LA+GCWDQTLSFY  SG +  + R
Sbjct:  139 KVGAKILSARWSHDGQYLALGMYDGRISIRDKGGQEYKLIEKK-APVWCLAWSPAKEDPGDLLAVGCWDQTLSFYQLSGTQHLKER 223
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: A0A662WK66_9STRA (Intraflagellar transport protein 122 homolog n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WK66_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.420e-22
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    4 QVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPATEE--GDILALGCWDQTLSFYLSSG 237
            +V AKIL+  WS DG  LALG ++G V +RD  G EK  I R +APVW LAW PATEE   D+LA+GCWD+TL+FY  SG
Sbjct: 1307 KVVAKILAACWSKDGQLLALGLLNGTVTLRDKQGAEKRLIERSNAPVWALAWSPATEEDASDVLAVGCWDRTLAFYTQSG 1386
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: A0A662X2J5_9STRA (Intraflagellar transport protein 122 homolog n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2J5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.430e-22
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    4 QVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPATEE--GDILALGCWDQTLSFYLSSG 237
            +V AKIL+  WS DG  LALG ++G V +RD  G EK  I R +APVW LAW PATEE   D+LA+GCWD+TL+FY  SG
Sbjct: 1356 KVVAKILAACWSKDGQLLALGLLNGTVTLRDKQGAEKRLIERSNAPVWALAWSPATEEDASDVLAVGCWDRTLAFYTQSG 1435
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: A0A2P4XSI5_9STRA (Intraflagellar transport protein 122 homolog n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSI5_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.870e-22
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    4 QVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPATEEG--DILALGCWDQTLSFYLSSG 237
            +V AKILS  WS DG  LALG ++G+V +RD  G EK  I R +APVW LAW PA E+   DILA+GCWD+TLSFY  SG
Sbjct:  136 KVVAKILSACWSKDGQLLALGLLNGNVTLRDKLGAEKRLIERSNAPVWALAWSPAHEDDSTDILAVGCWDRTLSFYSPSG 215
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BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Match: A0A397EQ07_9STRA (Intraflagellar transport protein 122 homolog n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EQ07_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.440e-21
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    4 QVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWCLAWCPATEEG-DILALGCWDQTLSFYLSSGEKFQQRR 258
            +V +KILS  WS DG +LALG  +GH+ IRD  G EK+TI R  APVW L+W P  EE  DILA+GCWD+TLSFY  +G ++ + R
Sbjct:  136 KVVSKILSASWSLDGEYLALGMFNGHILIRDKHGGEKITIERT-APVWSLSWSPGREEQMDILAVGCWDRTLSFYQFNGTQYGKDR 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17334.4496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXW9_ECTSI2.620e-3674.12Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A0J8B030_BETVV8.880e-2451.72Intraflagellar transport protein 122 homolog (Frag... [more]
A0A7S3VV23_9SPIT1.420e-2351.19Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A835ZL39_9STRA4.460e-2353.85Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A6U4JUW1_9STRA5.480e-2358.97Intraflagellar transport protein 122 homolog (Frag... [more]
A0A8J2WGR4_9STRA8.300e-2358.14Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A662WK66_9STRA7.420e-2258.75Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A662X2J5_9STRA7.430e-2258.75Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A2P4XSI5_9STRA8.870e-2260.00Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A397EQ07_9STRA3.440e-2155.81Intraflagellar transport protein 122 homolog n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17334contigH-elongata_contig17334:5091..5519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.5e-31
Seed eggNOG ortholog2880.D7FXW9
Preferred nameIFT122
KEGG koko:K16547,ko:K19656
GOsGO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0003002,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007227,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0008285,GO:0008589,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010171,GO:0010172,GO:0010646,GO:0010648,GO:0010970,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0021510,GO:0021511,GO:0021513,GO:0021532,GO:0021904,GO:0021914,GO:0021915,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030031,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035050,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035136,GO:0035148,GO:0035239,GO:0035295,GO:0035556,GO:0035720,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043113,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0045879,GO:0046626,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048568,GO:0048580,GO:0048582,GO:0048583,GO:0048585,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051641,GO:0051649,GO:0051668,GO:0051716,GO:0051960,GO:0051961,GO:0060173,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060830,GO:0060831,GO:0060971,GO:0060972,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0072594,GO:0072657,GO:0090596,GO:0097458,GO:0097499,GO:0097500,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1900076,GO:1903441,GO:1905515,GO:1990778,GO:2000026
EggNOG free text desc.ciliary receptor clustering involved in smoothened signaling pathway
EggNOG OGsCOG2319@1,KOG1538@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.1342034-CDS-H-elongata_contig17334:5090..52181622930008.1342034-CDS-H-elongata_contig17334:5090..5218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17334 5091..5218 +
1691679243.7521322-CDS-H-elongata_contig17334:5090..52181691679243.7521322-CDS-H-elongata_contig17334:5090..5218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17334 5091..5218 +
1622930008.1596932-CDS-H-elongata_contig17334:5389..55191622930008.1596932-CDS-H-elongata_contig17334:5389..5519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17334 5390..5519 +
1691679243.7660499-CDS-H-elongata_contig17334:5389..55191691679243.7660499-CDS-H-elongata_contig17334:5389..5519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17334 5390..5519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17334.4496.1prot_H-elongata_contig17334.4496.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17334 5091..5519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17334.4496.1

>prot_H-elongata_contig17334.4496.1 ID=prot_H-elongata_contig17334.4496.1|Name=mRNA_H-elongata_contig17334.4496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
WQVHAKILSVDWSSDGLHLALGFIDGHVGIRDADGIEKVTISRRDAPVWC
LAWCPATEEGDILALGCWDQTLSFYLSSGEKFQQRR
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mRNA from alignment at H-elongata_contig17334:5091..5519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17334.4496.1 ID=mRNA_H-elongata_contig17334.4496.1|Name=mRNA_H-elongata_contig17334.4496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig17334:5091..5519+ (Himanthalia elongata Himel1 dioecious)
TGGCAGGTACACGCGAAGATCTTATCTGTGGATTGGAGCTCGGATGGACT
ACACCTAGCCCTGGGATTTATCGATGGTCATGTGGGCATCAGAGATGCTG
ATGGTATTGAGAAAGTTACCATCAGCCGGTGGGATATCCAAAAGTGTCTC
ATTGCCCCCCCCTAGTCATACTGTGGGCGTTATTCCTTGGGATAAAAAAC
TTAGGAGCACGTGTACTGTGCTTCGCCTCAGTCGCCCGCCAAGTGACACC
ATGGTTGTCGCGCAATCCCTCACATGCGTAAATGGCGAATCGATCAAAGC
AGAGACGCTCCAGTGTGGTGCTTGGCGTGGTGCCCTGCTACAGAAGAGGG
GGATATCCTCGCCCTGGGTTGCTGGGATCAGACTCTTAGCTTCTATCTCT
CCTCAGGCGAGAAATTTCAACAGAGGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig17334:5091..5519+

>mRNA_H-elongata_contig17334.4496.1 ID=mRNA_H-elongata_contig17334.4496.1|Name=mRNA_H-elongata_contig17334.4496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig17334:5091..5519+ (Himanthalia elongata Himel1 dioecious)
TGGCAGGTACACGCGAAGATCTTATCTGTGGATTGGAGCTCGGATGGACT
ACACCTAGCCCTGGGATTTATCGATGGTCATGTGGGCATCAGAGATGCTG
ATGGTATTGAGAAAGTTACCATCAGCCGTGGCAGGTACACGCGAAGATCT
TATCTGTGGATTGGAGCTCGGATGGACTACACCTAGCCCTGGGATTTATC
GATGGTCATGTGGGCATCAGAGATGCTGATGGTATTGAGAAAGTTACCAT
CAGCCGCAGAGACGCTCCAGTGTGGTGCTTGGCGTGGTGCCCTGCTACAG
AAGAGGGGGATATCCTCGCCCTGGGTTGCTGGGATCAGACTCTTAGCTTC
TATCTCTCCTCAGGCGAGAAATTTCAACAGAGGAGACAGAGACGCTCCAG
TGTGGTGCTTGGCGTGGTGCCCTGCTACAGAAGAGGGGGATATCCTCGCC
CTGGGTTGCTGGGATCAGACTCTTAGCTTCTATCTCTCCTCAGGCGAGAA
ATTTCAACAGAGGAGA
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