mRNA_H-elongata_contig173308.4493.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5JI64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI64_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 4.910e-13 Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQQK 168
+VI+TD DQAA +AI + P S QKFC++H+ EN+ KHGRGLG+GVLAAV+ K
Sbjct: 151 EVIFTDGDQAAMTAIDEECPDSHQKFCVFHMDENLGKHGRGLGQGVLAAVKGK 203
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5JG50_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG50_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 1.260e-11 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQ 162
+VI+TD DQAA +AI Q P S Q+ CL+H+ EN+ KHG+GLG GVLAAV+
Sbjct: 232 EVIFTDGDQAAMTAIDQECPDSTQQLCLFHMDENLGKHGQGLGAGVLAAVK 282
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 2.090e-11 Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 1 GAIQVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQQK 168
G+ V++TD D AA AIA YPS+L K C++H ENIR HGRGL +GVL AV K
Sbjct: 402 GSPGVVFTDCDSAAMLAIANVYPSALNKLCIWHTMENIRDHGRGLAEGVLPAVLGK 457
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 2.850e-11 Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQ 162
+VI+TD DQAA +AI + P+S QK CL+H+ EN+ KHGRGL +GVLA V+
Sbjct: 196 EVIFTDADQAAMTAIDEECPASHQKLCLFHMDENLMKHGRGLEQGVLAGVE 246
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5K2Y1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y1_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.360e-10 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAV 159
QVI+TD D AA +AI + P S + CL+H+ EN+RKHG+GLG+GVLA V
Sbjct: 274 QVIFTDADAAAMAAIQKECPWSRHQLCLFHLDENLRKHGKGLGEGVLAGV 323
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 2.530e-10 Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query: 10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAV 159
+VI+TD D AA + I + P+S K C++H+ EN+RKHG+GLG+GVLAAV
Sbjct: 30 EVIFTDNDAAAMAGIEKESPASRGKVCVFHMDENLRKHGKGLGEGVLAAV 79
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5KGZ7_9PHAE (MULE domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ7_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.250e-9 Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 13 VIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAV 159
VI+TD D A +AI + P+S K C +H+ EN+RKHG+GLG+GVLAAV
Sbjct: 100 VIFTDADAATMAAIDKESPASRGKLCQFHMGENMRKHGKGLGEGVLAAV 148
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5K030_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K030_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 3.080e-9 Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLA 153
+V++TD DQAA +AI + P+S QK CL+H+ EN+ KHG GL +GVLA
Sbjct: 127 EVMFTDADQAAMTAIDEECPASHQKLCLFHMDENLMKHGEGLEQGVLA 174
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5KJW1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 4.010e-6 Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 34 QAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQ 162
+AA +AI + P+S QK CL+H+ EN+ KHG GL +GVLA V+
Sbjct: 196 EAAMTAIDEECPASHQKLCLFHMDENLMKHGEGLEQGVLAGVK 238
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 4.140e-6 Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1
Query: 40 ATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQ 162
A +AI + P+S QK CL+H+ EN+ KHGRGL +GVLA V+
Sbjct: 130 AMTAIDEECPASHQKLCLFHMDENLMKHGRGLEQGVLAGVE 170 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig173308.4493.1 >prot_H-elongata_contig173308.4493.1 ID=prot_H-elongata_contig173308.4493.1|Name=mRNA_H-elongata_contig173308.4493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp GAIQVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLback to top mRNA from alignment at H-elongata_contig173308:486..659- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig173308.4493.1 ID=mRNA_H-elongata_contig173308.4493.1|Name=mRNA_H-elongata_contig173308.4493.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig173308:486..659- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig173308:486..659- >mRNA_H-elongata_contig173308.4493.1 ID=mRNA_H-elongata_contig173308.4493.1|Name=mRNA_H-elongata_contig173308.4493.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig173308:486..659- (Himanthalia elongata Himel1 dioecious)back to top |