mRNA_H-elongata_contig173308.4493.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173308.4493.1
Unique NamemRNA_H-elongata_contig173308.4493.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5JI64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI64_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.910e-13
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQQK 168
            +VI+TD DQAA +AI +  P S QKFC++H+ EN+ KHGRGLG+GVLAAV+ K
Sbjct:  151 EVIFTDGDQAAMTAIDEECPDSHQKFCVFHMDENLGKHGRGLGQGVLAAVKGK 203          
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5JG50_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG50_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.260e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQ 162
            +VI+TD DQAA +AI Q  P S Q+ CL+H+ EN+ KHG+GLG GVLAAV+
Sbjct:  232 EVIFTDGDQAAMTAIDQECPDSTQQLCLFHMDENLGKHGQGLGAGVLAAVK 282          
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.090e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 GAIQVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQQK 168
            G+  V++TD D AA  AIA  YPS+L K C++H  ENIR HGRGL +GVL AV  K
Sbjct:  402 GSPGVVFTDCDSAAMLAIANVYPSALNKLCIWHTMENIRDHGRGLAEGVLPAVLGK 457          
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.850e-11
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQ 162
            +VI+TD DQAA +AI +  P+S QK CL+H+ EN+ KHGRGL +GVLA V+
Sbjct:  196 EVIFTDADQAAMTAIDEECPASHQKLCLFHMDENLMKHGRGLEQGVLAGVE 246          
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5K2Y1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.360e-10
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAV 159
            QVI+TD D AA +AI +  P S  + CL+H+ EN+RKHG+GLG+GVLA V
Sbjct:  274 QVIFTDADAAAMAAIQKECPWSRHQLCLFHLDENLRKHGKGLGEGVLAGV 323          
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.530e-10
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAV 159
            +VI+TD D AA + I +  P+S  K C++H+ EN+RKHG+GLG+GVLAAV
Sbjct:   30 EVIFTDNDAAAMAGIEKESPASRGKVCVFHMDENLRKHGKGLGEGVLAAV 79          
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5KGZ7_9PHAE (MULE domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.250e-9
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   13 VIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAV 159
            VI+TD D A  +AI +  P+S  K C +H+ EN+RKHG+GLG+GVLAAV
Sbjct:  100 VIFTDADAATMAAIDKESPASRGKLCQFHMGENMRKHGKGLGEGVLAAV 148          
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5K030_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K030_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.080e-9
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   10 QVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLA 153
            +V++TD DQAA +AI +  P+S QK CL+H+ EN+ KHG GL +GVLA
Sbjct:  127 EVMFTDADQAAMTAIDEECPASHQKLCLFHMDENLMKHGEGLEQGVLA 174          
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5KJW1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.010e-6
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   34 QAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQ 162
            +AA +AI +  P+S QK CL+H+ EN+ KHG GL +GVLA V+
Sbjct:  196 EAAMTAIDEECPASHQKLCLFHMDENLMKHGEGLEQGVLAGVK 238          
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.140e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   40 ATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVLAAVQ 162
            A +AI +  P+S QK CL+H+ EN+ KHGRGL +GVLA V+
Sbjct:  130 AMTAIDEECPASHQKLCLFHMDENLMKHGRGLEQGVLAGVE 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173308.4493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JI64_9PHAE4.910e-1362.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG50_9PHAE1.260e-1160.78MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JXK5_9PHAE2.090e-1157.14SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JYV9_9PHAE2.850e-1158.82SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2Y1_9PHAE1.360e-1058.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K1S8_9PHAE2.530e-1056.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KGZ7_9PHAE2.250e-957.14MULE domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5K030_9PHAE3.080e-956.25MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KJW1_9PHAE4.010e-653.49MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KFX3_9PHAE4.140e-656.10SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173308contigH-elongata_contig173308:486..659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.9801035-CDS-H-elongata_contig173308:485..6591622930007.9801035-CDS-H-elongata_contig173308:485..659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173308 486..659 -
1691679243.6888177-CDS-H-elongata_contig173308:485..6591691679243.6888177-CDS-H-elongata_contig173308:485..659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173308 486..659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173308.4493.1prot_H-elongata_contig173308.4493.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173308 486..659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173308.4493.1

>prot_H-elongata_contig173308.4493.1 ID=prot_H-elongata_contig173308.4493.1|Name=mRNA_H-elongata_contig173308.4493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
GAIQVIYTDTDQAATSAIAQTYPSSLQKFCLYHIHENIRKHGRGLGKGVL
AAVQQKCN
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mRNA from alignment at H-elongata_contig173308:486..659-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173308.4493.1 ID=mRNA_H-elongata_contig173308.4493.1|Name=mRNA_H-elongata_contig173308.4493.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig173308:486..659- (Himanthalia elongata Himel1 dioecious)
GGGGCGATCCAGGTGATCTACACCGACACTGACCAGGCAGCAACTTCGGC AATCGCCCAAACCTACCCTTCATCGCTGCAGAAGTTTTGCCTGTACCACA TCCATGAGAACATCCGGAAACATGGTCGAGGTCTTGGAAAGGGCGTCCTG GCAGCAGTCCAGCAGAAGTGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig173308:486..659-

>mRNA_H-elongata_contig173308.4493.1 ID=mRNA_H-elongata_contig173308.4493.1|Name=mRNA_H-elongata_contig173308.4493.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig173308:486..659- (Himanthalia elongata Himel1 dioecious)
GGGGCGATCCAGGTGATCTACACCGACACTGACCAGGCAGCAACTTCGGC
AATCGCCCAAACCTACCCTTCATCGCTGCAGAAGTTTTGCCTGTACCACA
TCCATGAGAACATCCGGAAACATGGTCGAGGTCTTGGAAAGGGCGTCCTG
GCAGCAGTCCAGCAGAAGTGCAACGGGGCGATCCAGGTGATCTACACCGA
CACTGACCAGGCAGCAACTTCGGCAATCGCCCAAACCTACCCTTCATCGC
TGCAGAAGTTTTGCCTGTACCACATCCATGAGAACATCCGGAAACATGGT
CGAGGTCTTGGAAAGGGCGTCCTGGCAGCAGTCCAGCAGAAGTGCAAC
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