mRNA_H-elongata_contig17321.4490.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A6H5KT71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT71_9PHAE) HSP 1 Score: 429 bits (1102), Expect = 6.460e-146 Identity = 216/256 (84.38%), Postives = 237/256 (92.58%), Query Frame = 3
Query: 291 SMQGSVSLADTANRRSIFRESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILLI 1058
SMQG+V L D+A RRS+F + KPLALLHETIN+M AGRFPEGQTEIPFEAEV+GIDGMPLLNSYSGVYLSIGYHIS KIERG+MR +LSKK+EF++EVPGEA +P+TEVPFEIT ETLEYAPKRYGR RRLRPFRV+GRL+ A VSTS+PLTGEVVVEESE PIKSLEVQLVRVETV QA GQLREATEIQNLQIG+GDVCRGL IPIYMVLPRLFSCPTM+T RFRVEFELNVI+CFAEA+GYTATQNFQILL+
Sbjct: 47 SMQGNVCLFDSAERRSLFSDGPKPLALLHETINIMGAGRFPEGQTEIPFEAEVRGIDGMPLLNSYSGVYLSIGYHISAKIERGMMRNDLSKKIEFMVEVPGEAASPATEVPFEITPETLEYAPKRYGRQRRLRPFRVSGRLYSATVSTSQPLTGEVVVEESERPIKSLEVQLVRVETVSQAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 302
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: D8LQ86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ86_ECTSI) HSP 1 Score: 332 bits (852), Expect = 4.690e-109 Identity = 168/193 (87.05%), Postives = 181/193 (93.78%), Query Frame = 3
Query: 480 SYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILLI 1058
SYSGVYLSIGYHIS KIERG+MR +LSKK+EF++EVPGEA +P+TEVPFEIT ETLEYAPKRYGR RRLRPFRV+GRLH A VSTSRPLTGEVVVEESE PIKSLEVQLVRVETV QA GQLREATEIQNLQIG+GDVCRGL IPIYMVLPRLFSCPTM+T RFRVEFELNVI+CFAEA+GYTATQNFQILL+
Sbjct: 47 SYSGVYLSIGYHISAKIERGMMRNDLSKKIEFMVEVPGEAASPATEVPFEITPETLEYAPKRYGRQRRLRPFRVSGRLHSATVSTSRPLTGEVVVEESERPIKSLEVQLVRVETVSQAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 239
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: K3WEV9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEV9_GLOUD) HSP 1 Score: 219 bits (559), Expect = 2.560e-64 Identity = 126/272 (46.32%), Postives = 166/272 (61.03%), Query Frame = 3
Query: 255 VDYPANNAHGGRSM--QGSVSL---ADTANRRSIFRESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
+ P AH G +M +GS L A +A F + PL L++ I + AG+ P G T+IPFE E+ G D PL +Y GVY+S+ Y I RG+M+ L K MEFI+EVP P F IT ETLE ++ L + F +TGR+H + P TGE+VVE + PIKS+E+QL+RVE+V A G R+ATEIQN+QIG GDVCR LAIPIYM+ PRLF+CPTM+ +F+VEFE N+++ F DG T+NF I L
Sbjct: 28 ISSPKGFAHQGIAMKVEGSARLQVSAKSAGLFDAFYSAVAPLQLVYLHIPIAPAGKVPFGVTKIPFEFELVGNDAQPLFETYHGVYVSVKYEIVCDCVRGIMKSNLHKTMEFIVEVPLREPLRDAPEEFSITPETLENVRRKS--LTTIPDFHITGRIHRTNCPVNLPFTGEIVVEHASSPIKSVELQLIRVESVAHAEGVARDATEIQNVQIGWGDVCRQLAIPIYMIFPRLFTCPTMLAAKFKVEFETNIVVLFE--DGNMITENFPITL 295
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A8K1FJJ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJJ2_PYTOL) HSP 1 Score: 218 bits (555), Expect = 9.730e-64 Identity = 122/272 (44.85%), Postives = 170/272 (62.50%), Query Frame = 3
Query: 255 VDYPANNAHGGRSM--QGSVSLADTANRRSIFRE---SSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
+ P AH G SM +GS L +A +F + P+ L++ I V AG+ P G ++ PFE E+ GIDG L +Y GVY+S+ Y I+ RGLM+ L K +EFI+EVP + P F IT +LE +++ L + F+V+GR+H + P TGE+V+E + PIKS+E+QL+RVE+V + G R+ATEIQN+QIG GDVCR ++IPIYM+ PRLF+CPTM+T RF+VEFE NV++ F DG T+NF I L
Sbjct: 27 ISSPKGFAHQGISMKVEGSARLQLSAKSTGLFESFYNTVTPMDLVYFHIPVAPAGKVPLGISKFPFEFELTGIDGQQLFETYHGVYVSVKYEITCSCVRGLMKSTLQKTLEFIVEVPLQEPLHDAPEEFNITPNSLENVRRKH--LSTVPTFQVSGRIHRTNCPVNLPFTGEIVIEHASAPIKSIELQLIRVESVAHSEGVARDATEIQNVQIGWGDVCREMSIPIYMIFPRLFTCPTMLTPRFKVEFETNVVVLFE--DGNMITENFPITL 294
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: F0YB46_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB46_AURAN) HSP 1 Score: 218 bits (555), Expect = 1.350e-63 Identity = 132/303 (43.56%), Postives = 179/303 (59.08%), Query Frame = 3
Query: 207 SETSHELRWLMLMRPDVDYPANN--------------AHGGRSMQ--GSVSLADTANRRSIFRESS--KPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVE--QAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
SE H + L R D Y + AH G SM+ GS L + +F S +P LL I + GRFP+G TEIPFE E++ + G L SY GVY+++ Y ++ + +RG+M K L + +EFI+EVP + P+ F IT E+LE R + + F+V+G+LH + + P TGE VVEES+ +KS+E+QLVR ETV ++G REATEIQN+QI +GDVCR L IPIYM+ PRLF+CPTMIT F+VEFE+N+I+ F DGY T+NF I L
Sbjct: 5 SEIEHSTLEIALRRVDRIYRPGDVVDGKLIVSARKGWAHKGISMKVTGSAQLQLSHRSMGLFESVSSVRPRELLRTQIELTPPGRFPDGVTEIPFEFELQALAGEALHESYHGVYINVCYTMACECKRGVMSKPLERDIEFIVEVPSKESPPADPRAFSITPESLENV--RASSVAAIPRFKVSGKLHRQSCPINLPFTGEFVVEESQASVKSIELQLVRSETVRHPESGNTAREATEIQNIQIAEGDVCRNLVIPIYMIFPRLFTCPTMITDDFKVEFEVNLIVIFG--DGYMITENFPIKL 303
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A7S2MRC8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MRC8_9STRA) HSP 1 Score: 217 bits (552), Expect = 3.650e-63 Identity = 122/271 (45.02%), Postives = 174/271 (64.21%), Query Frame = 3
Query: 255 VDYPANNAHGGRSMQ--GSVSLADTANRRSIFRESS--KPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
+ A +H G M G L +A +F S KPL L+ + +++++G+ P+G TEIPFE ++ +G L SY GVY+++ Y I+V ERG +K L + +EF++EVP A + + FEIT E+LE L ++ F+++GRL + P TGEV +E S+ P+KS+E+QLVRVETV+Q G +REATEIQN+QIGDGDVCR L +P+YM+ PRLF+CPTM+T F+VEFE+N+I+ F DGY T+NF I L
Sbjct: 39 ISSKAGWSHQGIMMHVAGHAKLQLSARSVGLFESMSNIKPLCLMDQNFDILDSGKVPDGVTEIPFEFQLPK-EG--LHESYHGVYINVEYKINVSCERGFPKKALHRNIEFVVEVPEAAKSETEPERFEITPESLENV--NASSLSKIPIFKISGRLFHKLCPINLPFTGEVTIEASQAPVKSIELQLVRVETVKQMGKTVREATEIQNIQIGDGDVCRNLVMPLYMIFPRLFTCPTMLTDSFQVEFEVNLIVVFG--DGYMVTENFPIEL 302
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: W2RB33_PHYPN (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=W2RB33_PHYPN) HSP 1 Score: 214 bits (545), Expect = 3.030e-62 Identity = 120/272 (44.12%), Postives = 170/272 (62.50%), Query Frame = 3
Query: 255 VDYPANNAHGGRSM--QGSVSL---ADTANRRSIFRESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
+ P +H G +M +GS + +A F + PL L++ + V AG+ P G T+ PFE E++G DG LL +Y GVY+S+ Y I RG+M+ +L K +EF++EVP P P + F IT E+LE R L + F +TG++H + P TGE+++EE++ PIKS+E+QL+RVE+V A G R+ATEIQN+QIG GDVCR +AIPIYM+ PRLF+CPTM+T F+VEFE NV++ F +G T+NF I L
Sbjct: 28 ISSPKGFSHQGLAMKVEGSARMQLSTKSAGLFDSFYNNVSPLELVYFHLPVAAAGKVPPGITKFPFEFELQGNDGQELLETYHGVYVSVKYEIICDCIRGIMKNKLHKTLEFVVEVPLREPLPDSPEEFHITPESLENV--RPQSLSAMPYFHITGKVHRTNCPVNLPFTGEIIIEEAKSPIKSVELQLIRVESVAHAEGIARDATEIQNVQIGWGDVCRQMAIPIYMIFPRLFTCPTMLTPAFKVEFETNVVVLFE--NGNMITENFPITL 295
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A0W8CRJ7_PHYNI (Down syndrome critical region protein 3 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CRJ7_PHYNI) HSP 1 Score: 214 bits (544), Expect = 4.260e-62 Identity = 120/272 (44.12%), Postives = 170/272 (62.50%), Query Frame = 3
Query: 255 VDYPANNAHGGRSM--QGSVSL---ADTANRRSIFRESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
+ P +H G +M +GS + +A F + PL L++ + V AG+ P G T+ PFE E++G DG LL +Y GVY+S+ Y I RG+M+ +L K +EF++EVP P P + F IT E+LE R L + F +TG++H + P TGE+++EE++ PIKS+E+QL+RVE+V A G R+ATEIQN+QIG GDVCR +AIPIYM+ PRLF+CPTM+T F+VEFE NV++ F +G T+NF I L
Sbjct: 28 ISSPKGFSHQGLAMKVEGSARMQLSTKSAGLFDSFYNNVSPLELVYFHLPVAAAGKVPPGITKFPFEFELQGNDGQELLETYHGVYVSVKYEIICDCIRGIMKNKLHKTLEFVVEVPLXEPLPDSPEEFHITPESLENV--RPQSLSAMPYFHITGKVHRTNCPVNLPFTGEIIIEEAKSPIKSVELQLIRVESVAHAEGIARDATEIQNVQIGWGDVCRQMAIPIYMIFPRLFTCPTMLTPAFKVEFETNVVVLFE--NGNMITENFPITL 295
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A7S2FUK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUK8_9STRA) HSP 1 Score: 210 bits (535), Expect = 9.630e-62 Identity = 115/224 (51.34%), Postives = 156/224 (69.64%), Query Frame = 3
Query: 390 VMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQ--AGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
V++AGR P+G TE PFE ++ +G L SY GVY+++ Y I+V ERG+M+K L + +EFI+EVP A + FEIT E+LE R L ++ F+++GRL + P TGEV +E S+ P+KS+E+QLVRVETV+ +G REATEIQN+QIGDGDVCR L IP+YM+ PRLF+CPTM+T F+VEFE+N+I+ FA DGY T+NF I+L
Sbjct: 4 VLDAGRLPDGTTETPFEFQLPS-EG--LHESYHGVYINVEYKINVDCERGVMKKALHRSIEFIVEVPENAKHETEPERFEITPESLENV--RSNTLDQIPKFKISGRLFHKLCPINLPFTGEVTIEASQAPVKSVELQLVRVETVKHPDSGNTAREATEIQNIQIGDGDVCRNLVIPLYMIFPRLFTCPTMLTELFKVEFEVNLIVVFA--DGYMVTENFPIVL 220
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: R7U226_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U226_CAPTE) HSP 1 Score: 210 bits (534), Expect = 1.240e-60 Identity = 119/264 (45.08%), Postives = 171/264 (64.77%), Query Frame = 3
Query: 291 SMQGSVSLADTANRRSIFR---ESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGE----APTPSTEVPFEITHETLEYAPKRYGRLRRLRP-FRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILLI 1058
+M+GSV+L +A +F S KP+ L++ TI+V + G+ P G+TEIPFE +K PL +Y GV+++I Y + V ++R L+ K+L K+ EFI+E + AP +T F IT +TL+ +++ + P F V GRL S P TGE+VV+ S PIKS+EVQLVRVET A G ++ATEIQN+Q+ DGDVCRG+AIPIYM+ PRLF+CPT+ T+ F+VEFE+N++I F D + T+NF + L+
Sbjct: 41 TMEGSVNLQLSAKSVGLFEAFYNSLKPIQLINYTIDVAKPGKLPNGRTEIPFEIPLKTKGNKPLYETYHGVFVNIQYLLKVDMKRSLLNKDLQKQCEFIVEYKEQKEKVAPKKAT---FSITPDTLQNIKEKH-----IVPNFEVRGRLDSTICRLSDPFTGELVVDSSVAPIKSIEVQLVRVETCGCAEGYAKDATEIQNIQVADGDVCRGMAIPIYMIFPRLFTCPTLTTSNFKVEFEINIVIVFT--DDHLVTENFPVTLL 294 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17321.4490.1 >prot_H-elongata_contig17321.4490.1 ID=prot_H-elongata_contig17321.4490.1|Name=mRNA_H-elongata_contig17321.4490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=321bp MVHSVYLAKEGFCTMNPVDVELKRFVPPIPPPVFHHSETSHELRWLMLMRback to top mRNA from alignment at H-elongata_contig17321:326..5236+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17321.4490.1 ID=mRNA_H-elongata_contig17321.4490.1|Name=mRNA_H-elongata_contig17321.4490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4911bp|location=Sequence derived from alignment at H-elongata_contig17321:326..5236+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17321:326..5236+ >mRNA_H-elongata_contig17321.4490.1 ID=mRNA_H-elongata_contig17321.4490.1|Name=mRNA_H-elongata_contig17321.4490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1926bp|location=Sequence derived from alignment at H-elongata_contig17321:326..5236+ (Himanthalia elongata Himel1 dioecious)back to top |