mRNA_H-elongata_contig173001.4482.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173001.4482.1
Unique NamemRNA_H-elongata_contig173001.4482.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: A0A6H5JII8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.000e-32
Identity = 58/77 (75.32%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 ITLVSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGE 231
            ITL+ FG+HFVKNSFSSLE YFL+DP+LHFN TKYG+++SAIS+PNLFMPFFGGLFLDS GHKQG++IFL ++L+G 
Sbjct:  136 ITLLPFGAHFVKNSFSSLEVYFLEDPKLHFNETKYGTVMSAISIPNLFMPFFGGLFLDSKGHKQGIIIFLSLELIGH 212          
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: D7FMB1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMB1_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 7.570e-30
Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    1 ITLVSFGSHFVKNSFSSLETYFL-QDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGE 231
            ITL+ FG+HFVKN FSSLE YFL QDP+LHFN TKYG+++SAI +PNLFMPFFGGLFLDS GHKQG+++FL ++L+G 
Sbjct:    5 ITLLPFGAHFVKNYFSSLEVYFLEQDPKLHFNETKYGTVMSAIWIPNLFMPFFGGLFLDSKGHKQGIIMFLSVELIGH 82          
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: A0A835Z1U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.910e-21
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 ITLVSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGE 231
            ++L+ FG+HFVKNS SSL+ Y L  P LHFNA KYGS++SA S+PN+ MPFFGG+ LDS   + GL  FL + + G 
Sbjct:  110 VSLLPFGAHFVKNSLSSLQVYLLTSPSLHFNAIKYGSIMSAQSLPNVLMPFFGGIILDSKNSRVGLRTFLAVTVAGH 186          
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: A0A836CI63_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI63_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.140e-19
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 ITLVSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGE 231
            ++LV FGSHFVKNS SSL+ YF+ +P+L+F   KYGS++SA S+PN+ MPF GG+ LDS G + G+  FL I L G 
Sbjct:  147 VSLVPFGSHFVKNSLSSLQVYFMDNPKLNFTGVKYGSIMSAQSLPNIVMPFLGGVILDSKGPRVGIKTFLAIALAGH 223          
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: K8YXS2_NANGC (Major facilitator superfamily n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YXS2_NANGC)

HSP 1 Score: 85.9 bits (211), Expect = 8.060e-18
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 ITLVSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGE 231
            I+++ FG HFVKN  +SLE Y + D  LH + T+YG L+S  S+PN F+PF GG+FLD  GH+   L+FL + LLG+
Sbjct:  175 ISVLPFGGHFVKNCLTSLEVYMVNDARLHLSETRYGLLLSMSSLPNFFIPFLGGVFLDKRGHRFATLLFLFLVLLGQ 251          
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: W7TQA4_9STRA (Major facilitator superfamily n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQA4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 8.120e-18
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 ITLVSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGE 231
            I+++ FG HFVKN  +SLE Y + D  LH + T+YG L+S  S+PN F+PF GG+FLD  GH+   L+FL + LLG+
Sbjct:  323 ISVLPFGGHFVKNCLTSLEVYMVNDARLHLSETRYGLLLSMSSLPNFFIPFLGGVFLDKRGHRFATLLFLFLVLLGQ 399          
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: A0A6G0WCA3_9STRA (MFS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCA3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.960e-16
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 ITLVSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGES 234
            I LV FG HFVKN  S+LE   L DP +  + T YG+L SA+S+PN+ +PFFGG  LDS GH   +LIFL++  +G++
Sbjct:   37 ICLVPFGGHFVKNEMSALEQLLLDDPVVPVSNTMYGALNSAVSIPNMIVPFFGGHVLDSKGHDS-ILIFLVVMCIGQA 113          
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: A0A8K1CGU8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGU8_PYTOL)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-15
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 ITLVSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGES 234
            ++L+ FG HFVKN  S+LE   L+DP+     T YG+LVSA+SVPN+F+P +GG FLD +GH+  +  FLI   +G++
Sbjct:   54 MSLIPFGGHFVKNGMSALEPLMLEDPDFPMTNTMYGALVSAVSVPNMFIPLYGGRFLDKSGHRS-IQFFLIWICIGQA 130          
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: A0A2D4BWF3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWF3_PYTIN)

HSP 1 Score: 77.8 bits (190), Expect = 3.250e-15
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 ITLVSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGES 234
            ++ + FG HFVKN  SSLE   L+DP+     T YG+LVSA+SVPN+F+P FGG  LD +GH+  +  FLI   +G++
Sbjct:   64 MSCIPFGGHFVKNGMSSLEPLMLEDPDFPLTNTMYGALVSAVSVPNMFIPLFGGRLLDKSGHRS-IRFFLIWICIGQA 140          
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Match: A0A5D6XU00_9STRA (MFS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XU00_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.080e-15
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   10 VSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMPFFGGLFLDSNGHKQGLLIFLIIQLLGES 234
            + FG HFVKN  SSLE   L DP+     T YG+L+SA+SVPN+F+P FGG  LD +GH   +L+FL+   +G++
Sbjct:   99 IPFGGHFVKNGMSSLEQLMLDDPDFPITNTMYGALISAVSVPNMFLPLFGGRLLDKSGHAS-ILVFLVWICVGQA 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173001.4482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JII8_9PHAE1.000e-3275.32MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FMB1_ECTSI7.570e-3071.79MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z1U8_9STRA2.910e-2155.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CI63_9STRA1.140e-1955.84Major facilitator superfamily domain-containing pr... [more]
K8YXS2_NANGC8.060e-1850.65Major facilitator superfamily n=1 Tax=Nannochlorop... [more]
W7TQA4_9STRA8.120e-1850.65Major facilitator superfamily n=2 Tax=Monodopsidac... [more]
A0A6G0WCA3_9STRA5.960e-1651.28MFS domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A8K1CGU8_PYTOL1.150e-1548.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BWF3_PYTIN3.250e-1548.72Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6XU00_9STRA4.080e-1549.33MFS domain-containing protein n=1 Tax=Pythium bras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173001contigH-elongata_contig173001:7..898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue9.8e-25
Seed eggNOG ortholog2880.D7FMB1
Preferred nameim:7160594
EggNOG free text desc.transmembrane transport
EggNOG OGsCOG0477@1,KOG4686@2759
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.622124-CDS-H-elongata_contig173001:6..1681622930006.622124-CDS-H-elongata_contig173001:6..168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173001 7..168 -
1691679243.2519894-CDS-H-elongata_contig173001:6..1681691679243.2519894-CDS-H-elongata_contig173001:6..168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173001 7..168 -
1622930006.7800002-CDS-H-elongata_contig173001:826..8981622930006.7800002-CDS-H-elongata_contig173001:826..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173001 827..898 -
1691679243.2702153-CDS-H-elongata_contig173001:826..8981691679243.2702153-CDS-H-elongata_contig173001:826..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173001 827..898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173001.4482.1prot_H-elongata_contig173001.4482.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173001 7..898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173001.4482.1

>prot_H-elongata_contig173001.4482.1 ID=prot_H-elongata_contig173001.4482.1|Name=mRNA_H-elongata_contig173001.4482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
ITLVSFGSHFVKNSFSSLETYFLQDPELHFNATKYGSLVSAISVPNLFMP
FFGGLFLDSNGHKQGLLIFLIIQLLGES
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mRNA from alignment at H-elongata_contig173001:7..898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173001.4482.1 ID=mRNA_H-elongata_contig173001.4482.1|Name=mRNA_H-elongata_contig173001.4482.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=892bp|location=Sequence derived from alignment at H-elongata_contig173001:7..898- (Himanthalia elongata Himel1 dioecious)
ATCACTTTGGTGTCCTTCGGTTCCCACTTCGTGAAGAACTCCTTCAGCTC GCTCGAGACGTACTTTCTTCAGGTGAAATGGCGGAGGGGGGACGGGGGGG GGGGGGGTATCTTGATATCCTCACGTGTAACCCAGGTATTATTGTGGTGA TGCGGGGTAACGGTATACGCTAAAAGAAAAAAGGTTGATGTAGGCGATCC ACGAATTATTGATTTGTGTATTGTGTTTTATGTACCAGGTGTATTTATTT AAAAATTGCACATAATAACCGCGCAATCCGGCCCTGTCGTCCTAGTCCTT CTATGCCACTCGTATTGATCAATCCTCCTAGGTGGGGATCAATGATACTT ATTCCGAAAACATCTGATCAAACACGACAAAGGGGACTTGTATGTATTGG ATCATCCACGAACTGCTGCCACGAGTAAAGTAAAATAATAGAGCTGCTTC CGTTTTTATGCCGTGTACACAGTCGTCGCCATCGCGCTCACTAACCTGCG TTTATGAGTGAAACGAATACACGCATAAATCAATATCAATTTTGGCATGC GTGAACGAATTCACGAACCAAAAAACCGTAGAAAGACACCCCGATCTTCA CATCTACGTGCTGGTCGGCCACACGCTTCTTCTTCGGGTGCTGGTCTACG TGACGTCACGCTTTGCCGCCTTGCCTTGCCTTGCCATGCCCTGCCCTGCA TCAATTGAATATAATACGAACAACAATCAGGACCCGGAGCTACACTTCAA CGCCACCAAGTACGGCTCACTAGTGTCGGCGATATCGGTGCCGAACCTCT TTATGCCCTTCTTCGGGGGATTGTTCCTCGACTCCAACGGGCACAAGCAA GGCCTCTTAATTTTTCTCATCATCCAGCTCTTGGGTGAGTCA
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Coding sequence (CDS) from alignment at H-elongata_contig173001:7..898-

>mRNA_H-elongata_contig173001.4482.1 ID=mRNA_H-elongata_contig173001.4482.1|Name=mRNA_H-elongata_contig173001.4482.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig173001:7..898- (Himanthalia elongata Himel1 dioecious)
ATCACTTTGGTGTCCTTCGGTTCCCACTTCGTGAAGAACTCCTTCAGCTC
GCTCGAGACGTACTTTCTTCAGATCACTTTGGTGTCCTTCGGTTCCCACT
TCGTGAAGAACTCCTTCAGCTCGCTCGAGACGTACTTTCTTCAGGACCCG
GAGCTACACTTCAACGCCACCAAGTACGGCTCACTAGTGTCGGCGATATC
GGTGCCGAACCTCTTTATGCCCTTCTTCGGGGGATTGTTCCTCGACTCCA
ACGGGCACAAGCAAGGCCTCTTAATTTTTCTCATCATCCAGCTCTTGGGT
GAGTCAGACCCGGAGCTACACTTCAACGCCACCAAGTACGGCTCACTAGT
GTCGGCGATATCGGTGCCGAACCTCTTTATGCCCTTCTTCGGGGGATTGT
TCCTCGACTCCAACGGGCACAAGCAAGGCCTCTTAATTTTTCTCATCATC
CAGCTCTTGGGTGAGTCA
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