mRNA_H-elongata_contig172986.4481.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172986.4481.1
Unique NamemRNA_H-elongata_contig172986.4481.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: D8LUB4_ECTSI (Fructose-2,6-bisphosphate 2-phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.100e-24
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKLLDD-TH 153
            +AVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGC+EKRFKLLDD TH
Sbjct:  345 QAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCNEKRFKLLDDDTH 396
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: A0A6H5KPW9_9PHAE (6PF2K domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.690e-24
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKLLDD-TH 153
            +AVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGC+EKRFKLLDD TH
Sbjct:  471 QAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCNEKRFKLLDDDTH 522
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: A0A835ZGS1_9STRA (Fructose-2,6-bisphosphate 2-phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.750e-22
Identity = 43/49 (87.76%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKLLDD 147
            +AVLRCLYAYFLDLP+EE+PYLSIPLHTVIKLTPQAFGCSEKRFKL+++
Sbjct:  428 QAVLRCLYAYFLDLPNEEVPYLSIPLHTVIKLTPQAFGCSEKRFKLMEN 476
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: A0A7S2XYM4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYM4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.930e-20
Identity = 41/47 (87.23%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKLL 141
            +AVLRCLYAYFLDLP+EEIP+LSIPLHTVI+LTPQAFGCSEKR+KL+
Sbjct:  395 QAVLRCLYAYFLDLPTEEIPFLSIPLHTVIRLTPQAFGCSEKRYKLM 441
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: A0A4D9D6W8_9STRA (6PF2K domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6W8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.930e-18
Identity = 36/47 (76.60%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKLL 141
            +AVLRCLYAYFLDLP EE+PYL+IPLHTVIK+TP+A+GC+EKR+K++
Sbjct:  502 QAVLRCLYAYFLDLPPEEVPYLAIPLHTVIKVTPKAYGCAEKRYKMM 548
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: A0A0H2RDQ7_9AGAM (Bifunctional 6-phosphofructo-2-kinase/fructose-2,6-bisphosphate 2-phosphatase n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2RDQ7_9AGAM)

HSP 1 Score: 77.0 bits (188), Expect = 3.460e-15
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKL---LDDTH 153
            +A+LRCLYAYF DLP  ++PY+ IPLHTVIKLTP+A+GC E+RF L     DTH
Sbjct:  428 QAILRCLYAYFHDLPQADLPYIKIPLHTVIKLTPKAYGCDEERFALPIGAVDTH 481
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: A0A137Q267_9AGAR (Fructose-2,6-bisphosphatase n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137Q267_9AGAR)

HSP 1 Score: 77.0 bits (188), Expect = 3.480e-15
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKL---LDDTH 153
            +A+LRCLYAYF DLP E++PY+ IPLHTV+KLTP+A+GC E+R+ L     DTH
Sbjct:  438 QAILRCLYAYFHDLPQEDLPYVKIPLHTVLKLTPRAYGCDEERYTLPIGAVDTH 491
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: A0A427YLE3_9TREE (Fructose-2,6-bisphosphatase n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YLE3_9TREE)

HSP 1 Score: 77.0 bits (188), Expect = 3.500e-15
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKL---LDDTH 153
            +A+LRCLYAYFL LP EE+PY+ IPLHT+IK+TP A+GC E+R+ L     DTH
Sbjct:  490 QAILRCLYAYFLSLPQEELPYIKIPLHTLIKITPMAYGCHEERYHLPIAAVDTH 543
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: A0A4P9Z3K8_9FUNG (Histidine phosphatase superfamily n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z3K8_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 4.390e-15
Identity = 30/49 (61.22%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKLLDD 147
            +A+LRC+YAYF++LP +E+PY+ IPLHTVI+L P+A+GC E+RFK+  D
Sbjct:  230 QAILRCIYAYFMNLPRDELPYVRIPLHTVIQLVPKAYGCEERRFKVAID 278
[Close]
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Match: A0A7R9UEF5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEF5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.710e-15
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKL 138
            +AVLRCLYAYFLDLP EE+PYLSIPLHTVIKL  +AFG  E+RF L
Sbjct:  449 QAVLRCLYAYFLDLPEEEVPYLSIPLHTVIKLENRAFGWREQRFTL 494
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172986.4481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUB4_ECTSI4.100e-2494.23Fructose-2,6-bisphosphate 2-phosphatase n=1 Tax=Ec... [more]
A0A6H5KPW9_9PHAE8.690e-2494.236PF2K domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZGS1_9STRA4.750e-2287.76Fructose-2,6-bisphosphate 2-phosphatase n=1 Tax=Tr... [more]
A0A7S2XYM4_9STRA1.930e-2087.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D6W8_9STRA1.930e-1876.606PF2K domain-containing protein n=2 Tax=Monodopsid... [more]
A0A0H2RDQ7_9AGAM3.460e-1564.81Bifunctional 6-phosphofructo-2-kinase/fructose-2,6... [more]
A0A137Q267_9AGAR3.480e-1562.96Fructose-2,6-bisphosphatase n=1 Tax=Leucoagaricus ... [more]
A0A427YLE3_9TREE3.500e-1562.96Fructose-2,6-bisphosphatase n=1 Tax=Saitozyma podz... [more]
A0A4P9Z3K8_9FUNG4.390e-1561.22Histidine phosphatase superfamily n=1 Tax=Syncepha... [more]
A0A7R9UEF5_9STRA4.710e-1578.26Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172986contigH-elongata_contig172986:1084..1239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue3.7e-20
Seed eggNOG ortholog2880.D8LUB4
Preferred namePFKFB3
KEGG rclassRC00152
KEGG koko:K01103,ko:K19028,ko:K19029,ko:K19030
KEGG ReactionR02731
KEGG Pathwayko00051,ko04066,ko04152,ko04919,ko04922,map00051,map04066,map04152,map04919,map04922
GOsGO:0000166,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0003873,GO:0004331,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006000,GO:0006003,GO:0006006,GO:0006007,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008144,GO:0008150,GO:0008152,GO:0008443,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009605,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010562,GO:0010563,GO:0010646,GO:0010647,GO:0010675,GO:0010676,GO:0010677,GO:0010817,GO:0010906,GO:0014070,GO:0014074,GO:0016051,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019203,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023051,GO:0023056,GO:0030554,GO:0030808,GO:0030809,GO:0030810,GO:0030811,GO:0030812,GO:0030813,GO:0031099,GO:0031100,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031667,GO:0031960,GO:0031974,GO:0031981,GO:0032024,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032868,GO:0032879,GO:0032880,GO:0032991,GO:0033131,GO:0033133,GO:0033674,GO:0033762,GO:0033993,GO:0034284,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042578,GO:0042594,GO:0042802,GO:0042866,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0043436,GO:0043467,GO:0043470,GO:0043540,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045820,GO:0045821,GO:0045912,GO:0045913,GO:0045934,GO:0045935,GO:0045936,GO:0045937,GO:0045980,GO:0045981,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046683,GO:0046700,GO:0046835,GO:0046883,GO:0046887,GO:0046939,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048731,GO:0048856,GO:0050308,GO:0050708,GO:0050714,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051194,GO:0051195,GO:0051196,GO:0051197,GO:0051198,GO:0051222,GO:0051223,GO:0051338,GO:0051347,GO:0051384,GO:0051591,GO:0055086,GO:0060322,GO:0061695,GO:0062012,GO:0062013,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070095,GO:0070201,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090087,GO:0090276,GO:0090277,GO:0090407,GO:0097159,GO:0097367,GO:1900371,GO:1900372,GO:1900373,GO:1900542,GO:1900543,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1903299,GO:1903301,GO:1903530,GO:1903532,GO:1903578,GO:1903579,GO:1903580,GO:1904951,GO:1990234,GO:2001169,GO:2001170,GO:2001171
EggNOG free text desc.6phosphofructo2kinase
EggNOG OGsCOG0406@1,KOG0234@2759
EC2.7.1.105,3.1.3.46
COG Functional cat.G
BiGG ReactioniMM904.YJL155C,iND750.YJL155C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.5713656-CDS-H-elongata_contig172986:1083..12391622930006.5713656-CDS-H-elongata_contig172986:1083..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172986 1084..1239 -
1691679243.2404559-CDS-H-elongata_contig172986:1083..12391691679243.2404559-CDS-H-elongata_contig172986:1083..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172986 1084..1239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172986.4481.1prot_H-elongata_contig172986.4481.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172986 1084..1239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172986.4481.1

>prot_H-elongata_contig172986.4481.1 ID=prot_H-elongata_contig172986.4481.1|Name=mRNA_H-elongata_contig172986.4481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
KAVLRCLYAYFLDLPSEEIPYLSIPLHTVIKLTPQAFGCSEKRFKLLDDT
H*
back to top

mRNA from alignment at H-elongata_contig172986:1084..1239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172986.4481.1 ID=mRNA_H-elongata_contig172986.4481.1|Name=mRNA_H-elongata_contig172986.4481.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig172986:1084..1239- (Himanthalia elongata Himel1 dioecious)
AAGGCGGTTTTGCGTTGCCTTTACGCCTACTTTCTGGACCTCCCATCGGA
AGAGATACCCTACCTCAGCATCCCGCTCCACACTGTCATCAAGCTCACGC
CACAAGCCTTCGGCTGTAGCGAAAAACGCTTCAAGCTTCTCGATGACACG
CACTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig172986:1084..1239-

>mRNA_H-elongata_contig172986.4481.1 ID=mRNA_H-elongata_contig172986.4481.1|Name=mRNA_H-elongata_contig172986.4481.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig172986:1084..1239- (Himanthalia elongata Himel1 dioecious)
AAGGCGGTTTTGCGTTGCCTTTACGCCTACTTTCTGGACCTCCCATCGGA
AGAGATACCCTACCTCAGCATCCCGCTCCACACTGTCATCAAGCTCACGC
CACAAGCCTTCGGCTGTAGCGAAAAACGCTTCAAGCTTCTCGATGACACG
CACTAAAAGGCGGTTTTGCGTTGCCTTTACGCCTACTTTCTGGACCTCCC
ATCGGAAGAGATACCCTACCTCAGCATCCCGCTCCACACTGTCATCAAGC
TCACGCCACAAGCCTTCGGCTGTAGCGAAAAACGCTTCAAGCTTCTCGAT
GACACGCACTAA
back to top