mRNA_H-elongata_contig17295.4480.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17295.4480.1
Unique NamemRNA_H-elongata_contig17295.4480.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17295.4480.1 vs. uniprot
Match: D7G6P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P8_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 7.670e-31
Identity = 58/86 (67.44%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 MLKALGIDGSVMCMTTDTAANMKKGATVDM-PGVRWLGCSCHKVELTVQKFVNHRSLKQTLSIFTKVAGHLHKSALLQQGFENAQR 255
            MLKALGI+  V+ MTTDTAANMK G  V M P ++WLGC CHK ELTVQKFVN   LK+TL  FTKVAGHLHKSAL    F  AQ+
Sbjct:    1 MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKFVNTPGLKETLKRFTKVAGHLHKSALSLGAFFEAQK 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17295.4480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6P8_ECTSI7.670e-3167.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17295contigH-elongata_contig17295:1253..1507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.524802-CDS-H-elongata_contig17295:1252..15071622930006.524802-CDS-H-elongata_contig17295:1252..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17295 1253..1507 -
1691679243.2304213-CDS-H-elongata_contig17295:1252..15071691679243.2304213-CDS-H-elongata_contig17295:1252..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17295 1253..1507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17295.4480.1prot_H-elongata_contig17295.4480.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17295 1253..1507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17295.4480.1

>prot_H-elongata_contig17295.4480.1 ID=prot_H-elongata_contig17295.4480.1|Name=mRNA_H-elongata_contig17295.4480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MLKALGIDGSVMCMTTDTAANMKKGATVDMPGVRWLGCSCHKVELTVQKF
VNHRSLKQTLSIFTKVAGHLHKSALLQQGFENAQR
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mRNA from alignment at H-elongata_contig17295:1253..1507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17295.4480.1 ID=mRNA_H-elongata_contig17295.4480.1|Name=mRNA_H-elongata_contig17295.4480.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig17295:1253..1507- (Himanthalia elongata Himel1 dioecious)
ATGCTGAAGGCACTTGGGATTGACGGGTCCGTGATGTGCATGACGACCGA
CACGGCTGCAAATATGAAGAAGGGGGCCACGGTGGACATGCCTGGTGTAC
GGTGGCTGGGATGTTCGTGCCACAAGGTTGAGCTCACAGTGCAGAAGTTC
GTCAACCACCGCAGCCTGAAGCAGACACTTTCGATCTTCACCAAGGTTGC
GGGGCACCTGCACAAGTCTGCGCTGTTGCAGCAGGGGTTCGAGAACGCGC
AGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig17295:1253..1507-

>mRNA_H-elongata_contig17295.4480.1 ID=mRNA_H-elongata_contig17295.4480.1|Name=mRNA_H-elongata_contig17295.4480.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig17295:1253..1507- (Himanthalia elongata Himel1 dioecious)
ATGCTGAAGGCACTTGGGATTGACGGGTCCGTGATGTGCATGACGACCGA
CACGGCTGCAAATATGAAGAAGGGGGCCACGGTGGACATGCCTGGTGTAC
GGTGGCTGGGATGTTCGTGCCACAAGGTTGAGCTCACAGTGCAGAAGTTC
GTCAACCACCGCAGCCTGAAGCAGACACTTTCGATCTTCACCAAGGTTGC
GGGGCACCTGCACAAGTCTGCGCTGTTGCAGCAGGGGTTCGAGAACGCGC
AGAGGATGCTGAAGGCACTTGGGATTGACGGGTCCGTGATGTGCATGACG
ACCGACACGGCTGCAAATATGAAGAAGGGGGCCACGGTGGACATGCCTGG
TGTACGGTGGCTGGGATGTTCGTGCCACAAGGTTGAGCTCACAGTGCAGA
AGTTCGTCAACCACCGCAGCCTGAAGCAGACACTTTCGATCTTCACCAAG
GTTGCGGGGCACCTGCACAAGTCTGCGCTGTTGCAGCAGGGGTTCGAGAA
CGCGCAGAGG
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