mRNA_H-elongata_contig172913.4478.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172913.4478.1
Unique NamemRNA_H-elongata_contig172913.4478.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig172913.4478.1 vs. uniprot
Match: D8LNA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA4_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.320e-22
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 MSQCPHCFVGQCQKHRLQDHGRREAQLKAKMADPKATQRKLYEAIVTKQLDKLEAAARIASASE 192
            MSQCPHCFVGQCQ+H+LQDHG+RE  LK+KM DPKA Q++L++ +VT QLDKLEAAAR A+A +
Sbjct:    1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGD 64
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BLAST of mRNA_H-elongata_contig172913.4478.1 vs. uniprot
Match: A0A6H5K6N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 9.730e-22
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 MSQCPHCFVGQCQKHRLQDHGRREAQLKAKMADPKATQRKLYEAIVTKQLDKLEAAARIASASE 192
            MSQCPHCFVGQCQ+H+LQDHG+RE  LK+KM DPKA Q++L++ +VT QLDKLEAAAR A+A +
Sbjct:    1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGD 64
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BLAST of mRNA_H-elongata_contig172913.4478.1 vs. uniprot
Match: A0A836CMD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.440e-9
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 MSQCPHCFVGQCQKHRLQDHGRREAQLKAKMADPKATQRKLYEAIVTKQLDKLEA 165
            MSQC  CFVGQC++H LQDHG+R   L AK+     T +++YE ++ KQ+DK EA
Sbjct:    1 MSQCGACFVGQCKRHPLQDHGKRTKDLMAKLPSKSETLKRVYETLLKKQVDKFEA 55
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BLAST of mRNA_H-elongata_contig172913.4478.1 vs. uniprot
Match: A0A7S4D5P9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P9_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 4.320e-9
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 MSQCPHCFVGQCQKHRLQDHGRREAQLKAKMA-DPKATQRKLYEAIVTKQLDKLEA 165
            MS CP C+VG C+ H+LQDHGRRE +LK K   + K   +K+YE +V+ QL K+EA
Sbjct:    1 MSHCPTCWVGLCKVHKLQDHGRREKELKKKAGIENKEKLKKIYENLVSSQLSKMEA 56
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BLAST of mRNA_H-elongata_contig172913.4478.1 vs. uniprot
Match: W7T9Z9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9Z9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.700e-8
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 MSQCPHCFVGQCQKHRLQDHGRREAQLKAKMADPKATQRKLYEAIVTKQLDKLEAAARIASASE 192
            MS CP C+VGQC+KH+LQDHG RE   +A ++     QR+LYE++V   +D L+   +  + +E
Sbjct:    1 MSSCPQCYVGQCRKHKLQDHGARE---RALLSSRSELQRRLYESLVQPHVDTLKTTKKATAEAE 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172913.4478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LNA4_ECTSI2.320e-2270.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6N1_9PHAE9.730e-2270.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CMD5_9STRA1.440e-952.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D5P9_HETAK4.320e-953.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7T9Z9_9STRA9.700e-843.75Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172913contigH-elongata_contig172913:905..1096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D8LNA4
EggNOG OGs2CDWX@1,2S5HT@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_004580.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.231477-CDS-H-elongata_contig172913:904..10961622930006.231477-CDS-H-elongata_contig172913:904..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172913 905..1096 +
1691679243.071355-CDS-H-elongata_contig172913:904..10961691679243.071355-CDS-H-elongata_contig172913:904..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172913 905..1096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172913.4478.1prot_H-elongata_contig172913.4478.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172913 905..1096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172913.4478.1

>prot_H-elongata_contig172913.4478.1 ID=prot_H-elongata_contig172913.4478.1|Name=mRNA_H-elongata_contig172913.4478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MSQCPHCFVGQCQKHRLQDHGRREAQLKAKMADPKATQRKLYEAIVTKQL
DKLEAAARIASASE
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mRNA from alignment at H-elongata_contig172913:905..1096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172913.4478.1 ID=mRNA_H-elongata_contig172913.4478.1|Name=mRNA_H-elongata_contig172913.4478.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig172913:905..1096+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCAGTGTCCCCACTGTTTCGTGGGACAGTGTCAAAAGCACAGGCT
TCAAGATCATGGCAGACGCGAGGCCCAGCTAAAGGCCAAAATGGCGGACC
CGAAGGCCACTCAGAGAAAGCTCTACGAGGCGATCGTCACCAAACAGCTT
GACAAGCTCGAGGCCGCCGCCCGGATCGCCTCGGCTTCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig172913:905..1096+

>mRNA_H-elongata_contig172913.4478.1 ID=mRNA_H-elongata_contig172913.4478.1|Name=mRNA_H-elongata_contig172913.4478.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig172913:905..1096+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCAGTGTCCCCACTGTTTCGTGGGACAGTGTCAAAAGCACAGGCT
TCAAGATCATGGCAGACGCGAGGCCCAGCTAAAGGCCAAAATGGCGGACC
CGAAGGCCACTCAGAGAAAGCTCTACGAGGCGATCGTCACCAAACAGCTT
GACAAGCTCGAGGCCGCCGCCCGGATCGCCTCGGCTTCGGAGATGTCTCA
GTGTCCCCACTGTTTCGTGGGACAGTGTCAAAAGCACAGGCTTCAAGATC
ATGGCAGACGCGAGGCCCAGCTAAAGGCCAAAATGGCGGACCCGAAGGCC
ACTCAGAGAAAGCTCTACGAGGCGATCGTCACCAAACAGCTTGACAAGCT
CGAGGCCGCCGCCCGGATCGCCTCGGCTTCGGAG
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