mRNA_H-elongata_contig105402.448.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105402.448.1
Unique NamemRNA_H-elongata_contig105402.448.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A1Y1IK20_KLENI (DUF659 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK20_KLENI)

HSP 1 Score: 65.9 bits (159), Expect = 1.300e-10
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYESHTNLRLITPCATRFATNVIVAMHMLK 231
            C AH +DL L+D+G   + + TLK    +VKF+ NHH T A++  H++L L+ P  TRFAT+ I    +L+
Sbjct:  292 CVAHGMDLALEDVGKEEWVSPTLKAARDLVKFITNHHKTIALFRQHSDLELLKPGDTRFATSFITLERLLE 362          
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A388LT59_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LT59_CHABU)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-9
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYESHTNLRLITPCATRFATNVIVAMHML 228
            C AH +DL+L+D+G++G+ A  + +   V KF   H+ T    E+ T L+L+ P  TRF+TNVI+   +L
Sbjct:   60 CVAHVMDLILEDIGSIGWVASPIAQARLVTKFFNRHNHTREALETKTKLKLLLPTKTRFSTNVIMMRRLL 129          
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A388M3U7_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M3U7_CHABU)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-9
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   13 MKCAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYESHTNLRLITPCATRFATNVIVAMHML 228
            ++C AH +DL+L+D+G++G+ A  + +   V KF K H       E  T L+L+ P  TRF TNVI+   +L
Sbjct:  555 IRCVAHVMDLILEDIGSIGWVASRIAQARLVTKFFKRHSHAREALEKKTKLKLLLPAETRFGTNVIMIRRLL 626          
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A804HMU3_MUSAM (DUF659 domain-containing protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804HMU3_MUSAM)

HSP 1 Score: 62.4 bits (150), Expect = 2.130e-9
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYESHTNLRLITPCATRFATNVIVAM------HMLKASVSS 246
            CAAH +D++LKD+G L      + R   + KF+ NHH   A+ +++ N  ++ P  TRFATN I         H LKA  SS
Sbjct:  221 CAAHCIDIMLKDIGELDAVKKCVARAQSITKFIYNHHWVHALMQNYVNGEILRPGITRFATNFIALKSLQQKRHGLKAMGSS 302          
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A388LA56_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LA56_CHABU)

HSP 1 Score: 62.4 bits (150), Expect = 2.170e-9
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYESHTNLRLITPCATRFATNVIVAMHMLK 231
            C AH +DL+L+D+G++G+ A  + +   + KF K H       E+ T L+L+ P  TRF TNVI+   +L+
Sbjct:  130 CVAHVMDLVLEDIGSIGWVASRIAQARLITKFFKRHSHACEALEAKTKLKLLLPAETRFGTNVIMIRRLLE 200          
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A388LG72_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LG72_CHABU)

HSP 1 Score: 61.2 bits (147), Expect = 5.720e-9
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYESHTNLRLITPCATRFATNVIVAMHML 228
            C AH +DL+L+D+G++G+ A  + +   V KF K H       E  T ++L+ P  TRF TNVI+   +L
Sbjct:  344 CVAHVMDLILEDIGSIGWVASRIAQARLVTKFFKRHSHAREALEKKTKMKLLLPAETRFGTNVIMIRRLL 413          
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A6U2CN76_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A6U2CN76_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-8
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   13 MKCAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYE--------SHTNLRLITPCATRFATNVIVAMHMLK 231
            ++C+ H V+L+LKD+G LG+ A  LK+  + VKF++NHH   A+           H +  L++P  TRF T+V++   +L+
Sbjct:   69 VRCSTHGVNLMLKDVGKLGWAAKWLKKARQCVKFLRNHHKPQALVRMFSSRMSNEHKDKELLSPGNTRFGTSVLMLGRLLE 149          
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A388K883_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K883_CHABU)

HSP 1 Score: 58.9 bits (141), Expect = 3.720e-8
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYESHTNLRLITPCATRFATNVIVAMHML 228
            C AH +DL+L+D+G++G+ A  + +   V KF K         E  T L+L+ P  TRF TNVI+   +L
Sbjct:  299 CVAHVMDLILEDIGSIGWVASRIAQARLVTKFFKRQSHAREALEKKTKLKLLLPAETRFGTNVIMIRRLL 368          
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A426WWC4_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426WWC4_ENSVE)

HSP 1 Score: 58.5 bits (140), Expect = 4.860e-8
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1
Query:   22 AAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYESHTNLRLITPCATRFATNVI 210
            AAH +DL+LKD+G L      + R   + KF+ NHH   ++ + + N  ++ P  TRFATN I
Sbjct:   89 AAHCIDLMLKDIGELDMVKKCVARAQSITKFIYNHHWVHSLMQKYVNDEILRPGVTRFATNFI 151          
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Match: A0A388JSR0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JSR0_CHABU)

HSP 1 Score: 58.2 bits (139), Expect = 6.880e-8
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   19 CAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYES-HTNLRLITPCATRFAT 201
            C AH   LLLKDL NL +  DT+K+ N +VKF++NHH T  +  +   +L L+ P   RF +
Sbjct:  402 CGAHCCSLLLKDLSNLPWVKDTVKKANTIVKFIRNHHSTHGLMMTIDDSLSLLRPTEVRFGS 463          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105402.448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1IK20_KLENI1.300e-1042.25DUF659 domain-containing protein n=1 Tax=Klebsormi... [more]
A0A388LT59_CHABU1.180e-940.00DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388M3U7_CHABU1.200e-938.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A804HMU3_MUSAM2.130e-939.02DUF659 domain-containing protein n=1 Tax=Musa acum... [more]
A0A388LA56_CHABU2.170e-938.03DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388LG72_CHABU5.720e-938.57DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A6U2CN76_9CHLO1.400e-835.80Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A388K883_CHABU3.720e-838.57Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A426WWC4_ENSVE4.860e-839.68Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A388JSR0_CHABU6.880e-843.55Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105402contigH-elongata_contig105402:1569..1832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue9.3e-08
Seed eggNOG ortholog4641.GSMUA_Achr11P13710_001
EggNOG free text desc.Protein of unknown function (DUF 659)
EggNOG OGs2CU6P@1,2RJJK@2759,37Z1G@33090,3GNGN@35493,3M5TQ@4447
COG Functional cat.S
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size261
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.117988-CDS-H-elongata_contig105402:1568..18291622929587.117988-CDS-H-elongata_contig105402:1568..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105402 1569..1829 -
1691679081.1865642-CDS-H-elongata_contig105402:1568..18291691679081.1865642-CDS-H-elongata_contig105402:1568..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105402 1569..1829 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.1313415-UTR-H-elongata_contig105402:1829..18321622929587.1313415-UTR-H-elongata_contig105402:1829..1832Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105402 1830..1832 -
1691679081.1978955-UTR-H-elongata_contig105402:1829..18321691679081.1978955-UTR-H-elongata_contig105402:1829..1832Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105402 1830..1832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105402.448.1prot_H-elongata_contig105402.448.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105402 1569..1829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105402.448.1

>prot_H-elongata_contig105402.448.1 ID=prot_H-elongata_contig105402.448.1|Name=mRNA_H-elongata_contig105402.448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MTGMKCAAHAVDLLLKDLGNLGFFADTLKRINKVVKFVKNHHGTSAIYES
HTNLRLITPCATRFATNVIVAMHMLKASVSSVCFII*
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mRNA from alignment at H-elongata_contig105402:1569..1832-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105402.448.1 ID=mRNA_H-elongata_contig105402.448.1|Name=mRNA_H-elongata_contig105402.448.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at H-elongata_contig105402:1569..1832- (Himanthalia elongata Himel1 dioecious)
AGAATGACAGGGATGAAGTGCGCAGCTCACGCTGTGGACCTGCTGCTCAA GGATCTCGGGAACCTTGGCTTCTTCGCCGACACCCTCAAGCGCATCAACA AGGTCGTGAAGTTCGTCAAAAACCACCACGGTACCAGTGCCATCTACGAG AGCCACACTAACCTCCGGTTGATCACCCCCTGCGCCACACGCTTCGCGAC CAATGTCATCGTGGCCATGCACATGCTGAAGGCAAGTGTTTCAAGTGTTT GCTTCATAATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig105402:1569..1832-

>mRNA_H-elongata_contig105402.448.1 ID=mRNA_H-elongata_contig105402.448.1|Name=mRNA_H-elongata_contig105402.448.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig105402:1569..1832- (Himanthalia elongata Himel1 dioecious)
ATGACAGGGATGAAGTGCGCAGCTCACGCTGTGGACCTGCTGCTCAAGGA
TCTCGGGAACCTTGGCTTCTTCGCCGACACCCTCAAGCGCATCAACAAGG
TCGTGAAGTTCGTCAAAAACCACCACGGTACCAGTGCCATCTACGAGAGC
CACACTAACCTCCGGTTGATCACCCCCTGCGCCACACGCTTCGCGACCAA
TGTCATCGTGGCCATGCACATGCTGAAGGCAAGTGTTTCAAGTGTTTGCT
TCATAATTTGAATGACAGGGATGAAGTGCGCAGCTCACGCTGTGGACCTG
CTGCTCAAGGATCTCGGGAACCTTGGCTTCTTCGCCGACACCCTCAAGCG
CATCAACAAGGTCGTGAAGTTCGTCAAAAACCACCACGGTACCAGTGCCA
TCTACGAGAGCCACACTAACCTCCGGTTGATCACCCCCTGCGCCACACGC
TTCGCGACCAATGTCATCGTGGCCATGCACATGCTGAAGGCAAGTGTTTC
AAGTGTTTGCTTCATAATTTGA
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