mRNA_H-elongata_contig17280.4471.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17280.4471.1
Unique NamemRNA_H-elongata_contig17280.4471.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17280.4471.1 vs. uniprot
Match: A0A836CG67_9STRA (Protein phosphatase 1 regulatory subunit 14B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG67_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 3 
Query:   42 TVKYDMHTLREVNAVEEAVLDELMALYQVEDEDDLPVDFDIFKVIEKDAIMRRQFLVDILADCPSSKGALEFIEKFLDRVKGLNPDI 302
            T KYDM  LRE+  VEEA ++EL+ LY V++ED+L V+FDI +++  D   RR  L D LADCP  K   EF++K+L+R+K LNP +
Sbjct:   28 TGKYDMSVLREIARVEEAAIEELVELYGVDEEDELAVEFDIHELMAMDPGDRRAALKDKLADCP--KPTDEFVDKYLERIKTLNPKL 112
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BLAST of mRNA_H-elongata_contig17280.4471.1 vs. uniprot
Match: W7UAB5_9STRA (Protein phosphatase 1 regulatory subunit 14d n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAB5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.050e-7
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 3 
Query:   30 NRAPTVKYDMHTLREVNAVEEAVLDELMALYQVEDEDDLPVDFDIFKVIEKDAIMRRQFLVDILADCPSSKGALEFIEKFLDRVKGLNPDI*NSMINRRRST-------FQTVY 350
            N+  T +YDM  L +V  VE+  +  L+ LY+V+DED LP++FD+ +VIE     R  FL + + +CPS       I++ L ++  LN  +    + +RRS        FQ +Y
Sbjct:   57 NKTLTGRYDMKQLIKVQQVEQWFMSCLVELYKVDDEDKLPINFDLLEVIEMSKDKRPTFLAEKMTECPSDVQPA--IKELLAKIDELNIQL---FVRQRRSRAGKDVEKFQFLY 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17280.4471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CG67_9STRA1.350e-1650.57Protein phosphatase 1 regulatory subunit 14B n=1 T... [more]
W7UAB5_9STRA3.050e-734.21Protein phosphatase 1 regulatory subunit 14d n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17280contigH-elongata_contig17280:1931..2872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001660.1
Exons2
Model size575
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17280.4471.1prot_H-elongata_contig17280.4471.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17280 2201..2816 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.7530394-UTR-H-elongata_contig17280:1930..22001622930005.7530394-UTR-H-elongata_contig17280:1930..2200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17280 1931..2200 -
1691679242.8622348-UTR-H-elongata_contig17280:1930..22001691679242.8622348-UTR-H-elongata_contig17280:1930..2200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17280 1931..2200 -
1622930005.8068874-UTR-H-elongata_contig17280:2816..28721622930005.8068874-UTR-H-elongata_contig17280:2816..2872Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17280 2817..2872 -
1691679242.8965886-UTR-H-elongata_contig17280:2816..28721691679242.8965886-UTR-H-elongata_contig17280:2816..2872Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17280 2817..2872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.7706625-CDS-H-elongata_contig17280:2200..23801622930005.7706625-CDS-H-elongata_contig17280:2200..2380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17280 2201..2380 -
1691679242.8760674-CDS-H-elongata_contig17280:2200..23801691679242.8760674-CDS-H-elongata_contig17280:2200..2380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17280 2201..2380 -
1622930005.7867162-CDS-H-elongata_contig17280:2747..28161622930005.7867162-CDS-H-elongata_contig17280:2747..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17280 2748..2816 -
1691679242.8863583-CDS-H-elongata_contig17280:2747..28161691679242.8863583-CDS-H-elongata_contig17280:2747..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17280 2748..2816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17280.4471.1

>prot_H-elongata_contig17280.4471.1 ID=prot_H-elongata_contig17280.4471.1|Name=mRNA_H-elongata_contig17280.4471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MHTLREVNAVEEAVLDELMALYQVEDEDDLPVDFDIFKVIEKDAIMRRQF
LVDILADCPSSKGALEFIEKFLDRVKGLNPDI*
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mRNA from alignment at H-elongata_contig17280:1931..2872-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17280.4471.1 ID=mRNA_H-elongata_contig17280.4471.1|Name=mRNA_H-elongata_contig17280.4471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at H-elongata_contig17280:1931..2872- (Himanthalia elongata Himel1 dioecious)
AGGAGAGCGAGCCGGAGACCCGCAAGCTGAACAGGGCCCCCACGGTTAAG
TACGACATGCATACCCTGAGGGAAGTTAATGCCGTGGAGGAGGCTGTTCT
TGACGAGCTCATGGCGTTGTACCAGGTACAGTATTGCAAAAATCTCTTAT
ATTGCCTTTATCTCTTATATTGCATATGAGCTCGGAATTCTGGCTGACTT
TAGAACCGCAATAGGTACTGCTTCATTGTTCAGCGGCGTAAAAAGGTTAT
GAGAAATGACATGAGCGACACAGTTCCCCAGAAAAGGCTTCCCCTGATAG
TTGCATGGGAACGAGCGAGGCGTCCATCGAGTTGTTTCATCATTGCGGGA
GACGTAGCTTTCGGCCCCACCAAACTCCGCTACATTTACAAGACTGTCCA
ACTCGAATGAAGACATTAACACGTGAAGCACGACTGCCTACATTCGCTGA
CCCGTCATCATCGTTGATGTTTGTTTGTCCCTTCGTTCCAAGGTCGAAGA
CGAAGACGATCTCCCCGTGGACTTCGACATCTTTAAAGTTATAGAAAAAG
ACGCCATCATGCGACGGCAATTCCTTGTCGATATACTCGCGGACTGTCCT
AGTAGCAAGGGCGCACTAGAATTTATTGAAAAGTTTCTTGATCGTGTTAA
GGGTCTCAACCCTGATATTTAGAATAGTATGATCAACCGCAGACGATCGA
CCTTTCAGACCGTGTACCAAGCTAATTAAATGTAGTTATGCTGTAGTTGG
TAACATGAAAATTGCCCGTCCTCGTTATTACCACTTGAATATCGTACCAG
CGATTTCGTGAGATGATAATTGCTTCGAATTCGCTTTTAATTGAAGAGCC
AGTATATTTACCGTAGGGTTAAAAATATTATCAGCAATATGATGAATGGG
GGAACTACCAAAGTTAAAGTTTAGCTTTCGGCAAGATCTACC
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Coding sequence (CDS) from alignment at H-elongata_contig17280:1931..2872-

>mRNA_H-elongata_contig17280.4471.1 ID=mRNA_H-elongata_contig17280.4471.1|Name=mRNA_H-elongata_contig17280.4471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig17280:1931..2872- (Himanthalia elongata Himel1 dioecious)
ATGCATACCCTGAGGGAAGTTAATGCCGTGGAGGAGGCTGTTCTTGACGA
GCTCATGGCGTTGTACCAGATGCATACCCTGAGGGAAGTTAATGCCGTGG
AGGAGGCTGTTCTTGACGAGCTCATGGCGTTGTACCAGGTCGAAGACGAA
GACGATCTCCCCGTGGACTTCGACATCTTTAAAGTTATAGAAAAAGACGC
CATCATGCGACGGCAATTCCTTGTCGATATACTCGCGGACTGTCCTAGTA
GCAAGGGCGCACTAGAATTTATTGAAAAGTTTCTTGATCGTGTTAAGGGT
CTCAACCCTGATATTTAGGTCGAAGACGAAGACGATCTCCCCGTGGACTT
CGACATCTTTAAAGTTATAGAAAAAGACGCCATCATGCGACGGCAATTCC
TTGTCGATATACTCGCGGACTGTCCTAGTAGCAAGGGCGCACTAGAATTT
ATTGAAAAGTTTCTTGATCGTGTTAAGGGTCTCAACCCTGATATTTAG
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