mRNA_H-elongata_contig1728.4470.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1728.4470.1
Unique NamemRNA_H-elongata_contig1728.4470.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: UPI001C173F55 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C173F55)

HSP 1 Score: 81.3 bits (199), Expect = 2.870e-14
Identity = 59/208 (28.37%), Postives = 91/208 (43.75%), Query Frame = 1
Query:   16 PQGKSNAIWTFFMVGTESNMNMALCQIGTCGRAVVSAKSPINLERHCKIYNKDHEPFANLRKSKALSKEKVDERHSGPMMKFVGPELAACDLRWILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTVFTAIGDKAIVARAGVVKLFV--GQLLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGER 633
            P    + +W  F    + N N    +   C ++  S  S   L  H   + K H   + ++   A S E    R      K  G E     L  ++ ++I   +P  VV+   FK  ++  S NPR  +PS +T+   IG+K    +  ++KLF      +S T D WTS    P M +TAHW+DD W+L+   +        HTGE+
Sbjct:   63 PTRAPSTVWQHFEKICDENGNRISIKCNYCNQSYSSKSSTTTLNDH---WEKKH---SKVQPGGAGSIEVAFSRAQTTYAKLQGEEYLDI-LNNLVNWVIADCQPFRVVDNLHFKKFIT--SLNPRFQIPSRQTLRKKIGEKYGQYKKDIIKLFQENDSKISFTSDMWTSDTGAPYMVLTAHWIDDKWDLKHTVIAFQRFSHPHTGEQ 261          
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: UPI001C17F6B8 (Hypothetical protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C17F6B8)

HSP 1 Score: 79.0 bits (193), Expect = 5.320e-14
Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  244 GPMMKFV--GPELAACDLRW---ILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTVFTAIGDKAIVARAGVVKLF--VGQLLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGER 633
            G M KFV    EL      W   ++ +++   +P +VVE++ FK ML +   N    +PS+ T+   I       +  +++    + + +S T D WTS NQIP +G+TAHW+ + W L+ + L  + L G H+GE 
Sbjct:  117 GAMDKFVKQADELKFTQDNWRNDLIKWVVVNDQPFTVVEDDHFKLMLKRL--NREATIPSAVTICKDIHQAFNDEQTFILEELQNMPRQISFTLDAWTSKNQIPFLGITAHWISENWELKKITLEFYHLKGPHSGEN 251          
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: UPI001C166EDF (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C166EDF)

HSP 1 Score: 77.8 bits (190), Expect = 3.330e-13
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  298 ILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTVFTAIGDKAIVARAGVVKLFV--GQLLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGER 633
            ++ ++I   +P  VV+   FK  ++  S NPR  +PS +T+   IG+K    +  ++KLF      +S T D WTS    P M +TAHW+DD W+L+   +     P  HTGE+
Sbjct:  144 LINWVIADCQPFRVVDNLHFKKFIT--SLNPRFQIPSRQTLRKKIGEKYGQYKKDIIKLFQENDSKISFTSDMWTSDTGAPYMVLTAHWIDDKWDLKHTVIAFQRFPYPHTGEQ 255          
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: A0A7J5XMT2_DISMA (BED-type domain-containing protein n=2 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5XMT2_DISMA)

HSP 1 Score: 75.1 bits (183), Expect = 3.380e-12
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = 1
Query:  268 PELAACDLRWILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTVFTAIGDKAIVARAGVVK---LFVGQLLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGER 633
            P++A      IL  ++   +PIS+VE+E FK M++ F  +P   LPS +T FT + +    A  G +K         ++LT D WTS      +G+T H++ D W L S CLT   L   HTG  
Sbjct:   92 PQMAGVLTESILNMLVNDMRPISMVEDEGFKQMVTTF--HPGYTLPS-RTHFTKLMEGKYEATFGKLKDALKATKNKIALTTDAWTSVATEAYLGITCHFISDDWELNSFCLTTMPLEERHTGTN 213          
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: A0A7J5YT73_DISMA (Uncharacterized protein n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5YT73_DISMA)

HSP 1 Score: 72.8 bits (177), Expect = 7.720e-12
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  298 ILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTVFTAIGDKAIVARAGVVK---LFVGQLLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGER 633
            IL  ++   +PIS+VE+E FK M++ F  +P   LPS +T FT + +    A  G +K         ++LT D WTS      +G+T H++ D W L S CLT   L   HTG  
Sbjct:    9 ILNMLVNDMRPISMVEDEGFKQMVTTF--HPGYTLPS-RTHFTKLMEGKYEATFGKLKDALKATKNKIALTTDAWTSVATEAYLGITCHFISDDWELNSFCLTTMPLEERHTGTN 120          
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: A0A671UMS5_SPAAU (BED-type domain-containing protein n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671UMS5_SPAAU)

HSP 1 Score: 73.2 bits (178), Expect = 1.640e-11
Identity = 61/211 (28.91%), Postives = 95/211 (45.02%), Query Frame = 1
Query:   37 IWTFFMVGTES-----NMNMALCQIGTCGRAVVSAKSPINLERHCKIYNKDHEPFANLRKSKALSKEKVDERHSGPMMKFVGPELAACDL-RWILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTVFTAIGDKAIVARAGVVKLFVGQLLS------LTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGER 633
            +W +F   T+      + + A+C++  C   V  + +  NL  H   ++ +    AN+++     +   +   S    K       A  + + +L FI    +P+SVVE E F+ M++     PR  +PS +     I D A+    G VK  V   LS      LTCD WTS      + +TAH +DD WNL+S  L    +  SHTGE 
Sbjct:   18 VWAYFGFKTKEGSYDVDKSHAVCKL--CNARVKYSGNTTNLRSHVARHHDNVALQANVKRVDPAQRTIQEVNFS----KLPATSTRATKITQSVLSFICKDMRPLSVVENEGFRKMITTLE--PRYTIPSRQH----ITDIALPKLYGQVKATVLDSLSSAERVALTCDAWTSRATESYVTLTAHHIDDQWNLKSHVLQTRAMRDSHTGEH 216          
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: UPI0009058986 (zinc finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009058986)

HSP 1 Score: 72.4 bits (176), Expect = 2.590e-11
Identity = 44/113 (38.94%), Postives = 55/113 (48.67%), Query Frame = 1
Query:  292 RWILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTVFTAIGDKAIVARAGVVKLFVGQLLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGE 630
            RW   F+I   +P  VVE E FK +++K    P   LPS  TV           +A +  L   Q + LT D WTS   +  M V+AHW+DD WNLQ   L  F  P  H GE
Sbjct:   77 RWFGEFVILDEQPFRVVEGEGFKKLIAKAL--PNFELPSRVTVARHCLRIYHEEKAKIKNLIKNQRVCLTSDTWTSLQNLTYMVVSAHWIDDQWNLQKKILNFFPTP-DHKGE 186          
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: UPI001C169548 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C169548)

HSP 1 Score: 70.5 bits (171), Expect = 3.480e-11
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = 1
Query:  250 MMKFV--GPELAACDLRW---ILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSS----KTVFTAIGDKAIVARAGVVKLFVGQLLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGE 630
            M KFV    EL      W   ++ +++   +P +VVE++ FK M+ +   N    +PS+    K +  A  DK       +  +  GQ+ S T D WTS NQIP +G+TAHW+ + W L+ + L  + L G   G+
Sbjct:  106 MDKFVKQADELKFTQDNWCNDLIKWVVVNDQPFTVVEDDHFKLMIKRL--NREATIPSAVTICKDIHQAFNDKQTFILEELQNV-PGQI-SFTLDAWTSKNQIPFLGITAHWISENWKLKKITLEFYHLKGPIPGK 237          
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: UPI001FADD490 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FADD490)

HSP 1 Score: 70.9 bits (172), Expect = 1.010e-10
Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 1
Query:  118 VSAKSPI-NLERHCKIYNKDHEPFANLRKSKALSKEKVDERHSGPMMKFVGPELAACDLRWILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTVFTAIGDKAIVARAGVVKLFVGQ---LLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGER 633
            ++AK P+ +      + +KD    A+   SKAL + K++E ++  M KF    L     +WI        +PI++VE++    +L   SN+P    PS  T+ T IG      +   +++ V      +++T D WTS+     +GVT H++D  WNL S  LTV      H  ++
Sbjct:   52 INAKHPVASAAATVNVSSKDISNLASH--SKALHQTKLEE-NTPRMSKFATDRLTNVLAKWIAL----NCRPINIVEDKGLTEVLQTASNDPSYKPPSRSTLTTKIGKMYDGEKKNKLEILVNDSPNYVAITGDQWTSAGNHSYLGVTGHFIDGEWNLNSFALTVMKTETRHFADK 220          
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Match: A0A015KDB4_RHIIW (BED-type domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015KDB4_RHIIW)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-9
Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  298 ILGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTV-------FTAIGDKAIVARAGVVKLFVGQ---LLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTVFGLPGSHTGER 633
            +L +++   +P   +E ++FK M+      P + +PS+ T+       F  + DK        V+L + +   LLS T D WTS NQ+P +G++ HW++  W LQS+ L    L G H+GE 
Sbjct:   97 LLQWVVRDDQPFITIECQEFKNMVKYLW--PSVNVPSANTLRRDLSANFEQVKDK--------VRLELQETPGLLSFTVDAWTSKNQLPFLGISVHWINKKWELQSLTLDFCLLSGQHSGEN 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1728.4470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C173F552.870e-1428.37Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C17F6B85.320e-1432.12Hypothetical protein n=3 Tax=Rhizophagus irregular... [more]
UPI001C166EDF3.330e-1335.09Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
A0A7J5XMT2_DISMA3.380e-1235.20BED-type domain-containing protein n=2 Tax=Dissost... [more]
A0A7J5YT73_DISMA7.720e-1236.52Uncharacterized protein n=1 Tax=Dissostichus mawso... [more]
A0A671UMS5_SPAAU1.640e-1128.91BED-type domain-containing protein n=1 Tax=Sparus ... [more]
UPI00090589862.590e-1138.94zinc finger BED domain-containing protein DAYSLEEP... [more]
UPI001C1695483.480e-1132.35Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001FADD4901.010e-1028.98E3 SUMO-protein ligase ZBED1-like n=1 Tax=Girardin... [more]
A0A015KDB4_RHIIW1.040e-931.97BED-type domain-containing protein n=3 Tax=Rhizoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1728contigH-elongata_contig1728:3882..4517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.2
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog78898.MVEG_03064T0
EggNOG free text desc.Encoded by
EggNOG OGs3A1BV@33154,3P5M0@4751,KOG1121@1,KOG1121@2759
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size636
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.7058578-CDS-H-elongata_contig1728:3881..45171622930005.7058578-CDS-H-elongata_contig1728:3881..4517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1728 3882..4517 +
1691679242.8430862-CDS-H-elongata_contig1728:3881..45171691679242.8430862-CDS-H-elongata_contig1728:3881..4517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1728 3882..4517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1728.4470.1prot_H-elongata_contig1728.4470.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1728 3882..4517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1728.4470.1

>prot_H-elongata_contig1728.4470.1 ID=prot_H-elongata_contig1728.4470.1|Name=mRNA_H-elongata_contig1728.4470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
MKWAKPQGKSNAIWTFFMVGTESNMNMALCQIGTCGRAVVSAKSPINLER
HCKIYNKDHEPFANLRKSKALSKEKVDERHSGPMMKFVGPELAACDLRWI
LGFIIGGFKPISVVEEEDFKTMLSKFSNNPRLVLPSSKTVFTAIGDKAIV
ARAGVVKLFVGQLLSLTCDGWTSSNQIPMMGVTAHWVDDMWNLQSVCLTV
FGLPGSHTGER*
back to top

mRNA from alignment at H-elongata_contig1728:3882..4517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1728.4470.1 ID=mRNA_H-elongata_contig1728.4470.1|Name=mRNA_H-elongata_contig1728.4470.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=636bp|location=Sequence derived from alignment at H-elongata_contig1728:3882..4517+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTGGGCGAAACCGCAGGGCAAGTCCAATGCGATCTGGACGTTCTT TATGGTGGGAACCGAAAGCAACATGAACATGGCTCTATGCCAAATCGGGA CGTGCGGGAGAGCAGTCGTCAGCGCGAAGAGTCCGATCAACCTTGAGAGG CACTGCAAAATCTATAACAAGGATCATGAACCTTTCGCAAACCTGCGAAA GAGTAAGGCACTGTCAAAAGAGAAAGTCGACGAAAGGCACTCGGGTCCTA TGATGAAGTTTGTCGGCCCCGAACTCGCCGCATGTGATCTGCGCTGGATC CTCGGGTTCATCATTGGAGGTTTCAAGCCCATCAGTGTGGTCGAAGAAGA AGACTTTAAAACGATGTTGTCCAAGTTTTCTAACAACCCGCGCTTGGTCC TCCCCAGTAGTAAGACCGTATTTACGGCCATTGGTGACAAGGCCATTGTA GCACGCGCTGGAGTGGTAAAACTATTTGTCGGCCAGTTGTTGAGTCTAAC GTGCGATGGTTGGACTTCAAGCAACCAGATTCCGATGATGGGGGTGACGG CGCACTGGGTCGACGATATGTGGAACCTCCAATCAGTATGCCTTACAGTG TTCGGGTTGCCGGGATCGCACACTGGCGAGAGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1728:3882..4517+

>mRNA_H-elongata_contig1728.4470.1 ID=mRNA_H-elongata_contig1728.4470.1|Name=mRNA_H-elongata_contig1728.4470.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig1728:3882..4517+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTGGGCGAAACCGCAGGGCAAGTCCAATGCGATCTGGACGTTCTT
TATGGTGGGAACCGAAAGCAACATGAACATGGCTCTATGCCAAATCGGGA
CGTGCGGGAGAGCAGTCGTCAGCGCGAAGAGTCCGATCAACCTTGAGAGG
CACTGCAAAATCTATAACAAGGATCATGAACCTTTCGCAAACCTGCGAAA
GAGTAAGGCACTGTCAAAAGAGAAAGTCGACGAAAGGCACTCGGGTCCTA
TGATGAAGTTTGTCGGCCCCGAACTCGCCGCATGTGATCTGCGCTGGATC
CTCGGGTTCATCATTGGAGGTTTCAAGCCCATCAGTGTGGTCGAAGAAGA
AGACTTTAAAACGATGTTGTCCAAGTTTTCTAACAACCCGCGCTTGGTCC
TCCCCAGTAGTAAGACCGTATTTACGGCCATTGGTGACAAGGCCATTGTA
GCACGCGCTGGAGTGGTAAAACTATTTGTCGGCCAGTTGTTGAGTCTAAC
GTGCGATGGTTGGACTTCAAGCAACCAGATTCCGATGATGGGGGTGACGG
CGCACTGGGTCGACGATATGTGGAACCTCCAATCAGTATGCCTTACAGTG
TTCGGGTTGCCGGGATCGCACACTGGCGAGAGGTGAATGAAGTGGGCGAA
ACCGCAGGGCAAGTCCAATGCGATCTGGACGTTCTTTATGGTGGGAACCG
AAAGCAACATGAACATGGCTCTATGCCAAATCGGGACGTGCGGGAGAGCA
GTCGTCAGCGCGAAGAGTCCGATCAACCTTGAGAGGCACTGCAAAATCTA
TAACAAGGATCATGAACCTTTCGCAAACCTGCGAAAGAGTAAGGCACTGT
CAAAAGAGAAAGTCGACGAAAGGCACTCGGGTCCTATGATGAAGTTTGTC
GGCCCCGAACTCGCCGCATGTGATCTGCGCTGGATCCTCGGGTTCATCAT
TGGAGGTTTCAAGCCCATCAGTGTGGTCGAAGAAGAAGACTTTAAAACGA
TGTTGTCCAAGTTTTCTAACAACCCGCGCTTGGTCCTCCCCAGTAGTAAG
ACCGTATTTACGGCCATTGGTGACAAGGCCATTGTAGCACGCGCTGGAGT
GGTAAAACTATTTGTCGGCCAGTTGTTGAGTCTAACGTGCGATGGTTGGA
CTTCAAGCAACCAGATTCCGATGATGGGGGTGACGGCGCACTGGGTCGAC
GATATGTGGAACCTCCAATCAGTATGCCTTACAGTGTTCGGGTTGCCGGG
ATCGCACACTGGCGAGAGGTGA
back to top