prot_H-elongata_contig17272.4467.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17272.4467.1
Unique Nameprot_H-elongata_contig17272.4467.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length227
Homology
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.480e-36
Identity = 91/262 (34.73%), Postives = 136/262 (51.91%), Query Frame = 0
Query:    2 VSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMGTTPFQMMTGRPPATAMSVLAGEDSGGW-------------------TQEDLRRDVVKRVREQREGVRELSGRGHLPVFKVGDYVLTWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMADV-----------------ISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 227
            + + LGV  +F VAN  W +GT ERM  EVV+T +A++ E R   R+W   + AV+WALN+ +RER G+TP+ +M GR P TA+S LA      W                    Q  L ++V+ +V+  R   R  +  G LP F VGDYV+        V     H   V++IV+GE ++VHV  +R YAD++L + AE+ +V                 +SV +D    +   V++ WVG + +E TWE +S ++  AP
Sbjct: 1450 LETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLKVQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVI--------VAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPGFD---VEVEWVGFDKEENTWEELSKMWDAAP 1700          
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.230e-12
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 0
Query:  104 DVVKRVREQREGVR--ELS-GRGHLPVFKVGDYVL---------------TWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMAD-------VISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 227
            D+ K    QRE  R  E++  +G +  F VGD+VL                W GP+RVV    +H+ +V+ ++T +  EVH   ++ Y DSSL V AE+ +       V+ V        ++ VQ+AW+GLED E +WE + +IY D P
Sbjct: 1052 DMHKEAATQREKKRLYEMARAKGRICNFVVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVAKQGIVLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVP 1199          
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.200e-11
Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 0
Query:  122 RGHLPVFKVGDYVL---------------TWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMAD-------------VISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 227
            +G +  F VGD+VL                W GP+RVV    +H+ ++E ++T +  EVH   ++ Y DSSL V AE+ +             +++   +P    E+ VQ+AW+GLED E +WE +  IYAD P
Sbjct:  219 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVP 350          
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A4DTE5_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DTE5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.760e-11
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0
Query:    6 LGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMGTTPFQMMTGRPPATAMSVLAG 90
            LG  HHF  A   W +GTVE +N EV+K+ +A+LSER+ P R+WP  L  V+ ALN M  +R+G        G+ P TA + L G
Sbjct:   72 LGAHHHFTTAYTPWANGTVEVVNREVLKSIKALLSERKLPVRDWPAVLPVVQSALNGMPADRLG--------GKSPLTAFTALPG 148          
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.170e-11
Identity = 51/164 (31.10%), Postives = 79/164 (48.17%), Query Frame = 0
Query:    2 VSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMG-TTPFQMMTGRPPATAM-SVLAGED----SGGWTQED--------------LRRDVVKRVREQREGVRELSGRGH---LPVFKVGDYVLTWTGPWR 142
            +S  LG  HHF  A   W +GTVE +N EV+K+ +A+LSERR   ++WP  L  V+ ALN+M  +R+G  TP    T  P  + +  +L   D    +  W +++              + R++     ++R   R+   +     LP F  GD+VL  T   R
Sbjct:  255 LSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALPGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTNASEKRRRAARDRHAKKRGVTLPRFSEGDFVLAATATGR 418          
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.770e-11
Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = 0
Query:  122 RGHLPVFKVGDYVL---------------TWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMAD-------------VISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 227
            +G +  F VGD+VL                W GP+RVV    +H+ +++ ++T +  EVH   ++ Y DSSL V AE+ +             +++   +P    E+ VQ+AW+GLED E +WE +  IYAD P
Sbjct:  842 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVP 973          
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.020e-11
Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = 0
Query:  122 RGHLPVFKVGDYVL---------------TWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMAD-------------VISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 227
            +G +  F VGD+VL                W GP+RVV    +H+ +++ ++T +  EVH   ++ Y DSSL V AE+ +             +++   +P    E+ VQ+AW+GLED E +WE +  IYAD P
Sbjct: 1258 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVP 1389          
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A3VNY3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VNY3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.430e-11
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 0
Query:    2 VSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMGTTPFQMMTGRPPATAMSVLAG 90
            +S  LG  HHF  A   W +GTVE +N EV+K+ +A+LSERR   ++WP  L  V+ ALN+M  +R+G        G  P TA + L G
Sbjct:    4 LSVALGAHHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLG--------GVTPLTAFTALPG 84          
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A3HM09_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HM09_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.640e-11
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 0
Query:    2 VSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMGTTPFQMMTGRPPATAMSVLAGE 91
            + S LG  HHF +A   W +GTVE +N EV+K+ +A+LSER+     WP  L  V+ ALNSM  +R+G        G  P TA + L GE
Sbjct:   17 LQSALGAHHHFTLAYTPWANGTVEVVNREVLKSVKALLSERKLQATYWPRVLSVVQAALNSMPSDRLG--------GATPLTAFTALPGE 98          
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: W4FAE8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FAE8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.080e-10
Identity = 62/246 (25.20%), Postives = 100/246 (40.65%), Query Frame = 0
Query:   10 HHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMG-TTPFQMMTGRPP---------------ATAMSVLAGEDSGGWTQEDLRRDVVKRVREQREGVRELSGRGHLPVFKVGDYVLTWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMADVISVGKDPARVEE------------YRVQIAWVGLEDKEPTWELMSTIYADAP 227
            HHF  A   W +GTVE +  ++++ FRA LSE R  P +WP A       LN +    +G   P   M+ RP                AT   V  G+       E++ + ++     +R+ +R+   +    V         W GP  V    S     VE+++    + VH   +  Y D  L V +E+   ++   +   VE             Y + I W GL+D + +W+  + I+AD P
Sbjct:  402 HHFTTARCLWANGTVEVVMQQLLRLFRACLSEWRMAPDQWPEAHLVSMLVLNQLPSPSLGGMAPVTAMSDRPAMSPAETMALPGQLISATLAEVEEGQRENIAALEEMHKQMLVENARKRDRLRQYHDKKK-GVQMAQKLRTKWCGPAVVTEVTSNWVYNVENLLAYYVRPVHASRLIFYEDCDLDVMSELLAHVAHNSEGFEVEAMVDARYVPTTNVYELLIKWRGLQDADNSWKPANNIFADLP 646          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE1.480e-3634.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225VKM9_9STRA3.230e-1234.23RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A6G0RPX5_9STRA1.200e-1133.58Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A6A4DTE5_9STRA1.760e-1144.71Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A6G0RX23_9STRA4.170e-1131.10Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A4G1U2_9STRA4.770e-1132.84Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KPV3_9STRA5.020e-1132.84Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A6A3VNY3_9STRA5.430e-1142.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3HM09_9STRA8.640e-1143.33Integrase catalytic domain-containing protein (Fra... [more]
W4FAE8_9STRA1.080e-1025.20Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..115
e-value: 2.0E-13
score: 52.0
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 5..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17272contigH-elongata_contig17272:2437..3270 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17272.4467.1mRNA_H-elongata_contig17272.4467.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17272 2437..3270 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17272.4467.1 ID=prot_H-elongata_contig17272.4467.1|Name=mRNA_H-elongata_contig17272.4467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MVSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWP
LALGAVKWALNSMYRERMGTTPFQMMTGRPPATAMSVLAGEDSGGWTQED
LRRDVVKRVREQREGVRELSGRGHLPVFKVGDYVLTWTGPWRVVPGGSEH
ARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMADVISVGKDPARVEEY
RVQIAWVGLEDKEPTWELMSTIYADAP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf