mRNA_H-elongata_contig17272.4467.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.480e-36 Identity = 91/262 (34.73%), Postives = 136/262 (51.91%), Query Frame = 1
Query: 4 VSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMGTTPFQMMTGRPPATAMSVLAGEDSGGW-------------------TQEDLRRDVVKRVREQREGVRELSGRGHLPVFKVGDYVLTWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMADV-----------------ISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 681
+ + LGV +F VAN W +GT ERM EVV+T +A++ E R R+W + AV+WALN+ +RER G+TP+ +M GR P TA+S LA W Q L ++V+ +V+ R R + G LP F VGDYV+ V H V++IV+GE ++VHV +R YAD++L + AE+ +V +SV +D + V++ WVG + +E TWE +S ++ AP
Sbjct: 1450 LETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLKVQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVI--------VAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPGFD---VEVEWVGFDKEENTWEELSKMWDAAP 1700
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 3.230e-12 Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 310 DVVKRVREQREGVR--ELS-GRGHLPVFKVGDYVL---------------TWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMAD-------VISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 681
D+ K QRE R E++ +G + F VGD+VL W GP+RVV +H+ +V+ ++T + EVH ++ Y DSSL V AE+ + V+ V ++ VQ+AW+GLED E +WE + +IY D P
Sbjct: 1052 DMHKEAATQREKKRLYEMARAKGRICNFVVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVAKQGIVLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVP 1199
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.200e-11 Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 1
Query: 364 RGHLPVFKVGDYVL---------------TWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMAD-------------VISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 681
+G + F VGD+VL W GP+RVV +H+ ++E ++T + EVH ++ Y DSSL V AE+ + +++ +P E+ VQ+AW+GLED E +WE + IYAD P
Sbjct: 219 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVP 350
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A4DTE5_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DTE5_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.760e-11 Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 16 LGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMGTTPFQMMTGRPPATAMSVLAG 270
LG HHF A W +GTVE +N EV+K+ +A+LSER+ P R+WP L V+ ALN M +R+G G+ P TA + L G
Sbjct: 72 LGAHHHFTTAYTPWANGTVEVVNREVLKSIKALLSERKLPVRDWPAVLPVVQSALNGMPADRLG--------GKSPLTAFTALPG 148
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 4.170e-11 Identity = 51/164 (31.10%), Postives = 79/164 (48.17%), Query Frame = 1
Query: 4 VSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMG-TTPFQMMTGRPPATAM-SVLAGED----SGGWTQED--------------LRRDVVKRVREQREGVRELSGRGH---LPVFKVGDYVLTWTGPWR 426
+S LG HHF A W +GTVE +N EV+K+ +A+LSERR ++WP L V+ ALN+M +R+G TP T P + + +L D + W +++ + R++ ++R R+ + LP F GD+VL T R
Sbjct: 255 LSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALPGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTNASEKRRRAARDRHAKKRGVTLPRFSEGDFVLAATATGR 418
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 4.770e-11 Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = 1
Query: 364 RGHLPVFKVGDYVL---------------TWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMAD-------------VISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 681
+G + F VGD+VL W GP+RVV +H+ +++ ++T + EVH ++ Y DSSL V AE+ + +++ +P E+ VQ+AW+GLED E +WE + IYAD P
Sbjct: 842 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVP 973
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 5.020e-11 Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = 1
Query: 364 RGHLPVFKVGDYVL---------------TWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMAD-------------VISVGKDPARVEEYRVQIAWVGLEDKEPTWELMSTIYADAP 681
+G + F VGD+VL W GP+RVV +H+ +++ ++T + EVH ++ Y DSSL V AE+ + +++ +P E+ VQ+AW+GLED E +WE + IYAD P
Sbjct: 1258 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVP 1389
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A3VNY3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VNY3_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 5.430e-11 Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 4 VSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMGTTPFQMMTGRPPATAMSVLAG 270
+S LG HHF A W +GTVE +N EV+K+ +A+LSERR ++WP L V+ ALN+M +R+G G P TA + L G
Sbjct: 4 LSVALGAHHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLG--------GVTPLTAFTALPG 84
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: A0A6A3HM09_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HM09_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 8.640e-11 Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 4 VSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMGTTPFQMMTGRPPATAMSVLAGE 273
+ S LG HHF +A W +GTVE +N EV+K+ +A+LSER+ WP L V+ ALNSM +R+G G P TA + L GE
Sbjct: 17 LQSALGAHHHFTLAYTPWANGTVEVVNREVLKSVKALLSERKLQATYWPRVLSVVQAALNSMPSDRLG--------GATPLTAFTALPGE 98
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Match: W4FAE8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FAE8_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.080e-10 Identity = 62/246 (25.20%), Postives = 100/246 (40.65%), Query Frame = 1
Query: 28 HHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPLALGAVKWALNSMYRERMG-TTPFQMMTGRPP---------------ATAMSVLAGEDSGGWTQEDLRRDVVKRVREQREGVRELSGRGHLPVFKVGDYVLTWTGPWRVVPGGSEHARVVEDIVTGETQEVHVVWMRLYADSSLVVGAEMADVISVGKDPARVEE------------YRVQIAWVGLEDKEPTWELMSTIYADAP 681
HHF A W +GTVE + ++++ FRA LSE R P +WP A LN + +G P M+ RP AT V G+ E++ + ++ +R+ +R+ + V W GP V S VE+++ + VH + Y D L V +E+ ++ + VE Y + I W GL+D + +W+ + I+AD P
Sbjct: 402 HHFTTARCLWANGTVEVVMQQLLRLFRACLSEWRMAPDQWPEAHLVSMLVLNQLPSPSLGGMAPVTAMSDRPAMSPAETMALPGQLISATLAEVEEGQRENIAALEEMHKQMLVENARKRDRLRQYHDKKK-GVQMAQKLRTKWCGPAVVTEVTSNWVYNVENLLAYYVRPVHASRLIFYEDCDLDVMSELLAHVAHNSEGFEVEAMVDARYVPTTNVYELLIKWRGLQDADNSWKPANNIFADLP 646 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17272.4467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17272.4467.1 >prot_H-elongata_contig17272.4467.1 ID=prot_H-elongata_contig17272.4467.1|Name=mRNA_H-elongata_contig17272.4467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp MVSSRLGVVHHFGVANVSWLHGTVERMNCEVVKTFRAVLSERRRPPREWPback to top mRNA from alignment at H-elongata_contig17272:2437..3270- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17272.4467.1 ID=mRNA_H-elongata_contig17272.4467.1|Name=mRNA_H-elongata_contig17272.4467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at H-elongata_contig17272:2437..3270- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17272:2437..3270- >mRNA_H-elongata_contig17272.4467.1 ID=mRNA_H-elongata_contig17272.4467.1|Name=mRNA_H-elongata_contig17272.4467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig17272:2437..3270- (Himanthalia elongata Himel1 dioecious)back to top |