prot_H-elongata_contig172663.4464.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig172663.4464.1
Unique Nameprot_H-elongata_contig172663.4464.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.740e-26
Identity = 53/136 (38.97%), Postives = 90/136 (66.18%), Query Frame = 0
Query:    1 VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 136
            +++V P P S     +A H   W+K M  E++G   AGTF L     +P+   ++ ++ VF WK+D+T +++K KARLVA+ F QK G+DY E +SPT +A+SI++VV +A + +  + ++D++Q FV++ LDH++
Sbjct:  139 IQDVKPEPGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAA--KIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEV 272          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.120e-26
Identity = 52/136 (38.24%), Postives = 91/136 (66.91%), Query Frame = 0
Query:    1 VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 136
            +++V P P S     ++ H   W+K M+ E++G   AGTF L     +P+   ++ ++ VF WK+D+T +++K KARLVA+ F QK G+DY E +SPT +A+SI++VV +A + +  + ++D++Q FV++ LDH++
Sbjct:  411 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAA--KIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEV 544          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.150e-26
Identity = 52/136 (38.24%), Postives = 91/136 (66.91%), Query Frame = 0
Query:    1 VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 136
            +++V P P S     ++ H   W+K M+ E++G   AGTF L     +P+   ++ ++ VF WK+D+T +++K KARLVA+ F QK G+DY E +SPT +A+SI++VV +A + +  + ++D++Q FV++ LDH++
Sbjct:  475 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAA--KIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEV 608          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.150e-26
Identity = 52/136 (38.24%), Postives = 91/136 (66.91%), Query Frame = 0
Query:    1 VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 136
            +++V P P S     ++ H   W+K M+ E++G   AGTF L     +P+   ++ ++ VF WK+D+T +++K KARLVA+ F QK G+DY E +SPT +A+SI++VV +A + +  + ++D++Q FV++ LDH++
Sbjct:  619 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAA--KIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEV 752          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.250e-26
Identity = 52/136 (38.24%), Postives = 91/136 (66.91%), Query Frame = 0
Query:    1 VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 136
            +++V P P S     ++ H   W+K M+ E++G   AGTF L     +P+   ++ ++ VF WK+D+T +++K KARLVA+ F QK G+DY E +SPT +A+SI++VV +A + +  + ++D++Q FV++ LDH++
Sbjct:  825 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAA--KIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEV 958          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.330e-25
Identity = 51/136 (37.50%), Postives = 90/136 (66.18%), Query Frame = 0
Query:    1 VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 136
            +++V P P S     ++ H   W+K M+ E++G   AGTF L     +P+   ++ ++ VF WK+D+T +++K KARLVA+ F QK G+DY E +SPT +A+SI++VV +A + +  + ++D++Q F ++ LDH++
Sbjct:  206 IQDVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAA--KIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEV 339          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.610e-24
Identity = 52/136 (38.24%), Postives = 89/136 (65.44%), Query Frame = 0
Query:    1 VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 136
            V++V   P S    R++ H   W+  M+ E++G   AGTF L     +P    ++ ++ VF WK+D+T +++K KARLVA+ F QK+G+DY E +SPT +A+SI+++V +A + D  + + D++Q FV++ LDH++
Sbjct:  773 VQDVESEPGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAV--KIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEV 906          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.130e-24
Identity = 52/134 (38.81%), Postives = 86/134 (64.18%), Query Frame = 0
Query:    1 VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDH 134
            +++V P P S    R++ H + W+  M+ E +G   AGTF L     VP    ++ ++ VF WK+D+T +++K KARLVA+ F QK GIDY   +SPT +A+SI+++V +A + +  + ++D++Q FV+  LDH
Sbjct:  160 IQDVQPEPDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAV--KVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDH 291          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.200e-22
Identity = 50/136 (36.76%), Postives = 90/136 (66.18%), Query Frame = 0
Query:    1 VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 136
            V++V   P S    +++ + + WE  M+ E++G   AGTF L     VP +  ++ ++ VF WK+D+T +++K KARLVA+ F QK+G+DY E +SPT +A+S ++VV +A + +  + + D++Q FV++ LD+++
Sbjct:  441 VQDVESVPDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAA--KVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEV 574          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.370e-22
Identity = 47/129 (36.43%), Postives = 84/129 (65.12%), Query Frame = 0
Query:    8 PTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 136
            P+S    R++ +   W+K ++ E  G   AGTF L     +P    ++ ++ V+ WK+++T +++K KARLVA+ F QK G+DY E +SPT  A+SI+++V +A + D  + ++D++Q FV++ LDH++
Sbjct:   15 PSSYNEARQSKYSSIWDKAISAEFGGLLRAGTFALAV--KIPIGCNVIDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYFETFSPTAHAASIRLLVALACKYDLELLHLDIEQAFVQSELDHEV 141          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP36_9PHAE3.740e-2638.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDZ0_9PHAE5.120e-2638.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE5.150e-2638.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE5.150e-2638.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE5.250e-2638.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE2.330e-2537.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE1.610e-2438.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPV1_9PHAE5.130e-2438.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE1.200e-2236.76Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KLE6_9PHAE1.370e-2236.43Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 43..135
e-value: 3.3E-17
score: 62.9
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 47..125
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 47..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172663contigH-elongata_contig172663:3..410 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172663.4464.1mRNA_H-elongata_contig172663.4464.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig172663 3..410 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig172663.4464.1 ID=prot_H-elongata_contig172663.4464.1|Name=mRNA_H-elongata_contig172663.4464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPK
NVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPS
ASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like