mRNA_H-elongata_contig172663.4464.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.020e-21 Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 1
Query: 7 EVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
+V P +VA K+ + + WE+ M E G+ GTF +D P+ + VSSK F WK++K +++K KARLVAR F+Q +DY SP PS++SIK+++ VANE ++ + DVKQ F A LD D+
Sbjct: 523 DVESPPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSF--VDGTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLVARGFSQTPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDV 654
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A392PM14_9FABA (Reverse transcriptase (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PM14_9FABA) HSP 1 Score: 85.9 bits (211), Expect = 6.490e-18 Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 67 WEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
W M EL+ + GT+ L ++ P N K ++ K V+ K E+ + KARLVA+ F QK GIDY E Y+P +++++VG+AN N+W ++ +DVK F+ PL ++
Sbjct: 35 WTNAMEEELEAIEKNGTWSLTDL---PPNKKAIAVKWVYKIKMSPQGEITRHKARLVAKGFLQKEGIDYDEVYAPVARIETVRLIVGIANINNWSIHQMDVKCAFLNGPLSEEV 145
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A182H4X3_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H4X3_AEDAL) HSP 1 Score: 88.2 bits (217), Expect = 1.180e-17 Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1
Query: 22 PTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
PT+VA +K D W +WE M E+ + GT+ L ++ P V+++ VF K E + KARLVAR F+QKFG DY E YSP +++ V+ +AN N ++ +DV F+ LD +I
Sbjct: 818 PTTVAEAKKRDDWSKWEAAMRDEMDSQSRNGTWRLTKL---PPGRTAVTNRWVFQIKRGLNGEPDRYKARLVARGFSQKFGFDYSETYSPVAKLDTLRTVLALANHNKMVVHQMDVSTAFLNGKLDEEI 943
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A392R7E7_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392R7E7_9FABA) HSP 1 Score: 82.8 bits (203), Expect = 1.700e-17 Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 67 WEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLD 399
W++ M EL + T +E+ +P + K ++ K VF K + V K KARL+AR F Q+ G+DY E YSP ++++VV +AN DW MY++DVK F+ PL+
Sbjct: 39 WKQAMIEELTAIEKNQT---WEMVNLPVDKKAIAVKWVFKLKLNPDGSVAKYKARLMARGFLQREGLDYSEVYSPVARIETVRLVVAIANARDWPMYHLDVKSAFLNGPLE 146
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A409X4K8_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409X4K8_9AGAR) HSP 1 Score: 85.9 bits (211), Expect = 7.360e-17 Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 1
Query: 43 RKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHD 405
RK W +WE+ + EL + GT+ + + P+N +V SK V K + E+ K KARLVAR FTQ +GIDY Y+P S+ + V+ +AN N W + +D F+ APL D
Sbjct: 385 RKRSDWPKWEEAIKKELLTLEKNGTWRIVKR---PENANVVDSKWVLRIKKNAAGEIDKYKARLVARGFTQVYGIDYDATYAPVARLSTFRYVIALANRNGWPIESIDFDSAFLNAPLGDD 502
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A8D8CEU4_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8CEU4_CULPI) HSP 1 Score: 82.0 bits (201), Expect = 8.640e-17 Identity = 41/129 (31.78%), Postives = 76/129 (58.91%), Query Frame = 1
Query: 22 PTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
P ++ + RK D WQ W+ + E+ + + T+ L ++ P+ K ++ K +F K + + ++ KARLVAR FTQ++G DY E YSP ++++++ VAN+ ++++ +DVK F+ L +I
Sbjct: 17 PDTLEALRKRDDWQHWQAAVHEEMLSHQKNKTWTLTKL---PEGRKPITCKWIFKIKRSGSGDPVRYKARLVARGFTQRYGFDYLETYSPVARMDTVRMLLAVANQQRFKVHQMDVKTAFLNGTLQEEI 142
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A438HC12_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HC12_VITVI) HSP 1 Score: 85.5 bits (210), Expect = 1.010e-16 Identity = 45/129 (34.88%), Postives = 75/129 (58.14%), Query Frame = 1
Query: 22 PTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
P SV+ +++ ++W + M E++ + G + L E+ PK+VK + K +F K D T +++ KARLVA+ FTQK GIDY+E +SP S S +I++ + D ++ +DVK F+ +D I
Sbjct: 651 PISVSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVEL---PKDVKPIGCKWIFKTKRDSTGNIVRYKARLVAKSFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKIAFLNGNIDETI 776
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A392M398_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M398_9FABA) HSP 1 Score: 81.3 bits (199), Expect = 1.030e-16 Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 67 WEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
W+K M EL+ + T +E+ +NV+ + K VF K + V K KARLVAR F QK GIDY E ++P +I+IVV +AN DW +Y++DVK F+ PL+ ++
Sbjct: 45 WKKAMIDELKSIEKNQT---WELVNPTENVRTIDLKWVFKIKLNPDGGVSKHKARLVARGFLQKKGIDYNEVFAPVARHETIRIVVAIAN--DWPLYHLDVKSTFLNGPLEENV 153
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: UPI001A4DFE48 (uncharacterized protein n=1 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A4DFE48) HSP 1 Score: 84.7 bits (208), Expect = 1.840e-16 Identity = 43/118 (36.44%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 49 ADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDH 402
+D Q+W++ + EL G GT +EI +P N K+V+SK V K D ++ KARLVAR FTQ+ GID++E ++P S+I+ ++ +A E DW ++ +D+ ++ + L H
Sbjct: 198 SDEAQQWQEAICKELDGLEAMGT---WEIVDIPPNTKLVNSKIVLHLKLDADGVPVRHKARLVARGFTQREGIDFEETFAPVAPLSAIRALLSLAVERDWEVHQLDITMAYLNSTLKH 312
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: UPI001A586D17 (uncharacterized protein n=21 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A586D17) HSP 1 Score: 84.3 bits (207), Expect = 2.600e-16 Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 67 WEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
WE+ M EL G GT +EI +PK V ++ V K+D K KARLVAR FTQ+ GIDY E ++P SI+ V+ VA DW M +DVKQ ++ + + HD+
Sbjct: 562 WEEAMRKELDGLEAMGT---WEIVDLPKGANTVDTRWVLKIKTDANLVPTKFKARLVARGFTQREGIDYTEVFAPVAPIQSIRGVIAVAAVRDWEMDSIDVKQAYLNSTIHHDV 672 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig172663.4464.1 >prot_H-elongata_contig172663.4464.1 ID=prot_H-elongata_contig172663.4464.1|Name=mRNA_H-elongata_contig172663.4464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKback to top mRNA from alignment at H-elongata_contig172663:3..410- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig172663.4464.1 ID=mRNA_H-elongata_contig172663.4464.1|Name=mRNA_H-elongata_contig172663.4464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig172663:3..410- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig172663:3..410- >mRNA_H-elongata_contig172663.4464.1 ID=mRNA_H-elongata_contig172663.4464.1|Name=mRNA_H-elongata_contig172663.4464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig172663:3..410- (Himanthalia elongata Himel1 dioecious)back to top |